| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is 39996462
Identifier: 39996462
GI number: 39996462
Start: 1487423
End: 1489186
Strand: Direct
Name: 39996462
Synonym: GSU1360
Alternate gene names: NA
Gene position: 1487423-1489186 (Clockwise)
Preceding gene: 39996461
Following gene: 39996463
Centisome position: 39.0
GC content: 44.56
Gene sequence:
>1764_bases ATGGATGTCTTAACTGACAATGAGTTTTACCAGCACTACCTTCAGAATTCACAGCACATGATGTGGTTTTTAGGGGCAGG AACGTCTCGTTCTGCTGGTTTGCCTACTGCTAGCGATATCATTTGGGATCTTAAACATCGATATTACTGCTTACATGAAA ATCAGGATTATCAAAAACATGACATCAATAATCATGCAATAAAAAGCAAAATCCAAAGTTATATGGATAGCAAGGGATTT CCTTTACAGTGGAGTCCAGAAGAATACTCATTTTATTTTGAATTGGTCTTCCGCGATGATTACGAGGCGCAACGAAAGTA CCTTTTAGAAGCCCTTGCCAGCAGAAAGGTGTCTCTGAATATCGGTCACCGAGTTCTTGCTGCCCTACTTGAGATGAACC AGACCAAAGTTGTTTTCACAACCAACTTTGATGATGTCATAGAAACCGCCTTCTCAGATATTAGTGGCAAGCATTTGTCT GTTTATCACCTTGAAGGATCCTATGCCGCCTTATCTGCATTGAATACCGAAGCCTTTCCCATTTACGCCAAGATTCATGG CGACTTCCGTTATCAAAAAATAAAAAATCTTACCCCAGATCTGCAGACCAATGATCGCGAAATACATAAATGCTTTCTTG CTGCAGCTATCAGGTTCGGTCTTGTTGTATCAGGCTATAGTGGTCGTGATGAAAACGTTATGACTATGCTTCGGGCTGCA ATCGATCAGAACAATGCATTCCCGCATGGGCTCTACTGGACCGTACCCTCTATTTCTAAGTCGGAGCCAGCCGTTCAGGA TTTGATCACTTACGCACAAGGCAAAGGTGTTCGCGCCTATCTGGTGGAAACCGGTACATTTGATGAAATGCTCTCAAAGA TTTGGCGACAGGTGAAAGACAAACCTGCTGCCATCGATGCCAAAGTACGAACAGCCCGAGTTTGTCCCGTTTCCATACCA CTACCCGGCCCCGGCAAATCCTTTCCGGCCTTGCGTACCAACGCTCTACCAGTGGTCACTCAATCCATCCGATGCGGAGT TGTAACGTTGGCTAGTCCTATAACCTTCTCCGAGCTGAAGGAAAGGATAAGTCAGAAATCGCCAAAAGCACTCCTGACGT ACACGGAAAAGGTATTGTTTTTGGGTGGAGAGCCAGAAATCAGAAAGATTTTTTCAAATGACGAGATCAATTCCATCGGT CAATACTATATTGATGAGATAGCTCAAAGCGTTGCCGCCTCTACTTTCTTGAAATCCTTTGTTGAGGAGGCAATTCTCAC TGCGTTATTGCGCGAGAAACCCATTCTGCACCGTGTCCGGCATAGAACACATTATGCAGTTATACCGAATGCCTCAGCAA AAGATGACAGATTTTTGGATTTAAGAAAGGCAGTGGGGTTCAAAGGAGATCTTGGGTACATTACCGGAAACGTTACAAAT GCAAAAGAATTGAGTTGGGCTGAAGCCGTGTCGATTCGTCTTGAAGAACGAGGGGGCAAGCTCTGGATCATGCTAAAACC GGAAATTTGGATAAAGCCATTGGATAGGCGAGAAGAGGCCACGGATTTCATTCGAAGTCGAAGACGTTATCGATTCAATC AATGTTCATATCAGATCCTCGATGCCTGGATCAAAATACTGTTCGGTTCAATCGGAGGTGGCGGTACGGTAAATATATCT TGTTTCCCTGATGCAGAGTTTAAAGCCGAGTTCGAGATCGGAACACGCACTGCCTTTAGTCTGGGGGTGGGATATGGCCG ATAA
Upstream 100 bases:
>100_bases TGCCGGTGGAGATGTTTGAGGATAATCGGCGGGGTGGGTGATTCTTGGGGCTGACAAGATAATCACTACTTCCAGACTTG TATACAGGGGATCTAATAGC
Downstream 100 bases:
>100_bases TCTTTCGCAGCTTGCGGCACATTCAACCATTCCAGAGCCCTTGCTTCTCTTCAAAGACAACCGTACAGACACACATCCTC TTCGTGGGCTCTCACAGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 587; Mature: 587
Protein sequence:
>587_residues MDVLTDNEFYQHYLQNSQHMMWFLGAGTSRSAGLPTASDIIWDLKHRYYCLHENQDYQKHDINNHAIKSKIQSYMDSKGF PLQWSPEEYSFYFELVFRDDYEAQRKYLLEALASRKVSLNIGHRVLAALLEMNQTKVVFTTNFDDVIETAFSDISGKHLS VYHLEGSYAALSALNTEAFPIYAKIHGDFRYQKIKNLTPDLQTNDREIHKCFLAAAIRFGLVVSGYSGRDENVMTMLRAA IDQNNAFPHGLYWTVPSISKSEPAVQDLITYAQGKGVRAYLVETGTFDEMLSKIWRQVKDKPAAIDAKVRTARVCPVSIP LPGPGKSFPALRTNALPVVTQSIRCGVVTLASPITFSELKERISQKSPKALLTYTEKVLFLGGEPEIRKIFSNDEINSIG QYYIDEIAQSVAASTFLKSFVEEAILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYITGNVTN AKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFIRSRRRYRFNQCSYQILDAWIKILFGSIGGGGTVNIS CFPDAEFKAEFEIGTRTAFSLGVGYGR
Sequences:
>Translated_587_residues MDVLTDNEFYQHYLQNSQHMMWFLGAGTSRSAGLPTASDIIWDLKHRYYCLHENQDYQKHDINNHAIKSKIQSYMDSKGF PLQWSPEEYSFYFELVFRDDYEAQRKYLLEALASRKVSLNIGHRVLAALLEMNQTKVVFTTNFDDVIETAFSDISGKHLS VYHLEGSYAALSALNTEAFPIYAKIHGDFRYQKIKNLTPDLQTNDREIHKCFLAAAIRFGLVVSGYSGRDENVMTMLRAA IDQNNAFPHGLYWTVPSISKSEPAVQDLITYAQGKGVRAYLVETGTFDEMLSKIWRQVKDKPAAIDAKVRTARVCPVSIP LPGPGKSFPALRTNALPVVTQSIRCGVVTLASPITFSELKERISQKSPKALLTYTEKVLFLGGEPEIRKIFSNDEINSIG QYYIDEIAQSVAASTFLKSFVEEAILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYITGNVTN AKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFIRSRRRYRFNQCSYQILDAWIKILFGSIGGGGTVNIS CFPDAEFKAEFEIGTRTAFSLGVGYGR >Mature_587_residues MDVLTDNEFYQHYLQNSQHMMWFLGAGTSRSAGLPTASDIIWDLKHRYYCLHENQDYQKHDINNHAIKSKIQSYMDSKGF PLQWSPEEYSFYFELVFRDDYEAQRKYLLEALASRKVSLNIGHRVLAALLEMNQTKVVFTTNFDDVIETAFSDISGKHLS VYHLEGSYAALSALNTEAFPIYAKIHGDFRYQKIKNLTPDLQTNDREIHKCFLAAAIRFGLVVSGYSGRDENVMTMLRAA IDQNNAFPHGLYWTVPSISKSEPAVQDLITYAQGKGVRAYLVETGTFDEMLSKIWRQVKDKPAAIDAKVRTARVCPVSIP LPGPGKSFPALRTNALPVVTQSIRCGVVTLASPITFSELKERISQKSPKALLTYTEKVLFLGGEPEIRKIFSNDEINSIG QYYIDEIAQSVAASTFLKSFVEEAILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYITGNVTN AKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFIRSRRRYRFNQCSYQILDAWIKILFGSIGGGGTVNIS CFPDAEFKAEFEIGTRTAFSLGVGYGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66560; Mature: 66560
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVLTDNEFYQHYLQNSQHMMWFLGAGTSRSAGLPTASDIIWDLKHRYYCLHENQDYQKH CCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHH DINNHAIKSKIQSYMDSKGFPLQWSPEEYSFYFELVFRDDYEAQRKYLLEALASRKVSLN CCCHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEE IGHRVLAALLEMNQTKVVFTTNFDDVIETAFSDISGKHLSVYHLEGSYAALSALNTEAFP HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCEE IYAKIHGDFRYQKIKNLTPDLQTNDREIHKCFLAAAIRFGLVVSGYSGRDENVMTMLRAA EEEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH IDQNNAFPHGLYWTVPSISKSEPAVQDLITYAQGKGVRAYLVETGTFDEMLSKIWRQVKD HHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCC KPAAIDAKVRTARVCPVSIPLPGPGKSFPALRTNALPVVTQSIRCGVVTLASPITFSELK CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHHH ERISQKSPKALLTYTEKVLFLGGEPEIRKIFSNDEINSIGQYYIDEIAQSVAASTFLKSF HHHHCCCCCEEEEEEEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VEEAILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYITGNVTN HHHHHHHHHHHCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEECCCCC AKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFIRSRRRYRFNQCSYQIL CHHHHHHHHEEEEEEECCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH DAWIKILFGSIGGGGTVNISCFPDAEFKAEFEIGTRTAFSLGVGYGR HHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCCC >Mature Secondary Structure MDVLTDNEFYQHYLQNSQHMMWFLGAGTSRSAGLPTASDIIWDLKHRYYCLHENQDYQKH CCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHH DINNHAIKSKIQSYMDSKGFPLQWSPEEYSFYFELVFRDDYEAQRKYLLEALASRKVSLN CCCHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEE IGHRVLAALLEMNQTKVVFTTNFDDVIETAFSDISGKHLSVYHLEGSYAALSALNTEAFP HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCCEE IYAKIHGDFRYQKIKNLTPDLQTNDREIHKCFLAAAIRFGLVVSGYSGRDENVMTMLRAA EEEEEECCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHH IDQNNAFPHGLYWTVPSISKSEPAVQDLITYAQGKGVRAYLVETGTFDEMLSKIWRQVKD HHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCC KPAAIDAKVRTARVCPVSIPLPGPGKSFPALRTNALPVVTQSIRCGVVTLASPITFSELK CCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCHHHHH ERISQKSPKALLTYTEKVLFLGGEPEIRKIFSNDEINSIGQYYIDEIAQSVAASTFLKSF HHHHCCCCCEEEEEEEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH VEEAILTALLREKPILHRVRHRTHYAVIPNASAKDDRFLDLRKAVGFKGDLGYITGNVTN HHHHHHHHHHHCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCCCCCCCEEECCCCC AKELSWAEAVSIRLEERGGKLWIMLKPEIWIKPLDRREEATDFIRSRRRYRFNQCSYQIL CHHHHHHHHEEEEEEECCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH DAWIKILFGSIGGGGTVNISCFPDAEFKAEFEIGTRTAFSLGVGYGR HHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA