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The map label for this gene is 39996357

Identifier: 39996357

GI number: 39996357

Start: 1368521

End: 1369105

Strand: Direct

Name: 39996357

Synonym: GSU1255

Alternate gene names: NA

Gene position: 1368521-1369105 (Clockwise)

Preceding gene: 39996356

Following gene: 39996358

Centisome position: 35.88

GC content: 58.46

Gene sequence:

>585_bases
ATGAAAACGAATAGCTGGCGTATCCTTCTCATTCTCGTTTCCTGTGTCTGGCTGAGTCAGCCCCTGTCCGCCGTGGCGGC
ACCGGCCACGTTCGCCTCGGCCACGGTGAAGCTTCATGATCTGGAATTGCTCGACCAGGATGGAAAGTCCCGGCGCTTCC
AGAGCGATGTCATCGGCGACCGGCTGGTGGCCATTACGTTCACCTACACCACCTGTACCACCATCTGCCCCATCCTCGAC
TCGATCTTCGTGACGCTCCAGAAAAAGCTCGGTGCCCGGATGGGAAAGGATTTCCACCTGATCACCATGAGTATCGACCC
GGTCAACGACATCCCGAAGCGGCTCAAGGCCTATTCCCTGAAACTCGGCGCCCGTCCCGGCTGGACATTCCTGACCGGCA
GCAAGGTGAACATGGACAAGGTGCTCGTGGGCCTCGACATGTACAGTCCGGACATTTACAACCACCCCCCCTCCATTATC
GTCGGGGATGGCAAGACCGGGGCCTGGCAACGGTTTTACGGTTTCCCGTCGGCCGACAAGATTCTTTCGTCCCTCACTGA
ACTGCAGAAGGCGCGTCACCATTGA

Upstream 100 bases:

>100_bases
TTTTTACGGCCAATTTCATCGCCCGGGGACGGCAGGCGGCAGGTACCCCTGCCCAGTCGCCCACGCGGTCTGACAACTAG
TCGCTTACAGGGTGCTGCAT

Downstream 100 bases:

>100_bases
ACCGCCGGGAGAACCACGTGAGAATCACGTTGTCAGCACCTGTCATTGCGCTTTGCCTGTTGCTTGCGGCAACATTACTG
CCATGTACCGCCGCGGCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: SCO1/SenC Family Protein; Transmembrane Protein; Sco1/SenC Family Protein; Electron Transporter SCO1/SenC Family Protein/Cytochrome C; Electron Transport /Senc; Secreted Protein

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MKTNSWRILLILVSCVWLSQPLSAVAAPATFASATVKLHDLELLDQDGKSRRFQSDVIGDRLVAITFTYTTCTTICPILD
SIFVTLQKKLGARMGKDFHLITMSIDPVNDIPKRLKAYSLKLGARPGWTFLTGSKVNMDKVLVGLDMYSPDIYNHPPSII
VGDGKTGAWQRFYGFPSADKILSSLTELQKARHH

Sequences:

>Translated_194_residues
MKTNSWRILLILVSCVWLSQPLSAVAAPATFASATVKLHDLELLDQDGKSRRFQSDVIGDRLVAITFTYTTCTTICPILD
SIFVTLQKKLGARMGKDFHLITMSIDPVNDIPKRLKAYSLKLGARPGWTFLTGSKVNMDKVLVGLDMYSPDIYNHPPSII
VGDGKTGAWQRFYGFPSADKILSSLTELQKARHH
>Mature_194_residues
MKTNSWRILLILVSCVWLSQPLSAVAAPATFASATVKLHDLELLDQDGKSRRFQSDVIGDRLVAITFTYTTCTTICPILD
SIFVTLQKKLGARMGKDFHLITMSIDPVNDIPKRLKAYSLKLGARPGWTFLTGSKVNMDKVLVGLDMYSPDIYNHPPSII
VGDGKTGAWQRFYGFPSADKILSSLTELQKARHH

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21568; Mature: 21568

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTNSWRILLILVSCVWLSQPLSAVAAPATFASATVKLHDLELLDQDGKSRRFQSDVIGD
CCCCCHHHHHHHHHHHHHHCCHHHHHCCHHHHHHEEEEEHHHHHCCCCCCHHHHHHHCCC
RLVAITFTYTTCTTICPILDSIFVTLQKKLGARMGKDFHLITMSIDPVNDIPKRLKAYSL
EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHH
KLGARPGWTFLTGSKVNMDKVLVGLDMYSPDIYNHPPSIIVGDGKTGAWQRFYGFPSADK
EECCCCCEEEEECCCCCHHHEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHCCCCCHHH
ILSSLTELQKARHH
HHHHHHHHHHHHCC
>Mature Secondary Structure
MKTNSWRILLILVSCVWLSQPLSAVAAPATFASATVKLHDLELLDQDGKSRRFQSDVIGD
CCCCCHHHHHHHHHHHHHHCCHHHHHCCHHHHHHEEEEEHHHHHCCCCCCHHHHHHHCCC
RLVAITFTYTTCTTICPILDSIFVTLQKKLGARMGKDFHLITMSIDPVNDIPKRLKAYSL
EEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHH
KLGARPGWTFLTGSKVNMDKVLVGLDMYSPDIYNHPPSIIVGDGKTGAWQRFYGFPSADK
EECCCCCEEEEECCCCCHHHEEEEEECCCCCCCCCCCCEEEECCCCCCHHHHCCCCCHHH
ILSSLTELQKARHH
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA