| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is gluP [H]
Identifier: 39996290
GI number: 39996290
Start: 1294073
End: 1294618
Strand: Direct
Name: gluP [H]
Synonym: GSU1188
Alternate gene names: 39996290
Gene position: 1294073-1294618 (Clockwise)
Preceding gene: 39996289
Following gene: 39996293
Centisome position: 33.93
GC content: 61.9
Gene sequence:
>546_bases GTGGTCCCCATCGACCGGTTCGGCCGGTTCTGGACGCTCCTGTCGGCTAACTACCTCCACGGCGGCCTGCTGCACATCTT CTTCAACATGATGGCCCTGCGGCAGATTGCTCCGCTGGTGGCGCGCGAATACGGTACCTGGCGAATGTTTTCCATCTATA CCCTCGGCGGGGTGGCCGGCTATGTAGTTTCCTATCTGGCCGGCACCGGTTACACCATCGGCGCATCGTGCGCCATCTGT GCACTGATCGGTTCGCTTCTCTACTACGGCAAGAGCAGGGGGGGGCTCTACGGCCAGGCGGTTTTCAAGGAGGTCTGGGG ATGGGTGGTCGGTCTCTTCCTGTTCGGGCTGATCGTGCCGGGGATCGACAACTGGGGGCACGGGGGGGGGATCCTGGGGG GGATCATCATGGCCTTCATTCTCGGCTATCGCGAGCGGCGCAGCGACAATCTCTTTCACACCTTCCTGGCAGGTGCCTGC GCCCTGGCCACGGCCGTATCGCTTCTACTCGGTTTTCTGAGCGTCTACTACACCTTCAGAGGGTGA
Upstream 100 bases:
>100_bases GGCATCGCTGCTGGTCGACAACCGTCCGCCTGGCCAGGGTGGGCTCTTTTCGGCCCTGTCGCCGGGGCGCAACAGCCTGC TGCTCCTGGGGGCCACCGGC
Downstream 100 bases:
>100_bases GACTGATTCCGGACTCAGTGCCACAGGCCGCTCAGGTGGCGACGCGGCACGCGGCTCACTTCCGCGATGTGGGGTGGGGC GCACGGCCCGCCGTCTTCGG
Product: rhomboid family protein
Products: NA
Alternate protein names: Intramembrane serine protease [H]
Number of amino acids: Translated: 181; Mature: 181
Protein sequence:
>181_residues MVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGASCAIC ALIGSLLYYGKSRGGLYGQAVFKEVWGWVVGLFLFGLIVPGIDNWGHGGGILGGIIMAFILGYRERRSDNLFHTFLAGAC ALATAVSLLLGFLSVYYTFRG
Sequences:
>Translated_181_residues MVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGASCAIC ALIGSLLYYGKSRGGLYGQAVFKEVWGWVVGLFLFGLIVPGIDNWGHGGGILGGIIMAFILGYRERRSDNLFHTFLAGAC ALATAVSLLLGFLSVYYTFRG >Mature_181_residues MVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRMFSIYTLGGVAGYVVSYLAGTGYTIGASCAIC ALIGSLLYYGKSRGGLYGQAVFKEVWGWVVGLFLFGLIVPGIDNWGHGGGILGGIIMAFILGYRERRSDNLFHTFLAGAC ALATAVSLLLGFLSVYYTFRG
Specific function: Rhomboid-type serine protease that catalyzes intramembrane proteolysis. Important for normal cell division and sporulation. May act as a glucose exporter [H]
COG id: COG0705
COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002610 - InterPro: IPR022764 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF01694 Rhomboid; PF00515 TPR_1 [H]
EC number: =3.4.21.105 [H]
Molecular weight: Translated: 19764; Mature: 19764
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRMFSIYTLGGVAG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH YVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGGLYGQAVFKEVWGWVVGLFLFGLIVP HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GIDNWGHGGGILGGIIMAFILGYRERRSDNLFHTFLAGACALATAVSLLLGFLSVYYTFR CCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC G C >Mature Secondary Structure MVPIDRFGRFWTLLSANYLHGGLLHIFFNMMALRQIAPLVAREYGTWRMFSIYTLGGVAG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH YVVSYLAGTGYTIGASCAICALIGSLLYYGKSRGGLYGQAVFKEVWGWVVGLFLFGLIVP HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC GIDNWGHGGGILGGIIMAFILGYRERRSDNLFHTFLAGACALATAVSLLLGFLSVYYTFR CCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]