| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is 39996091
Identifier: 39996091
GI number: 39996091
Start: 1063766
End: 1065799
Strand: Direct
Name: 39996091
Synonym: GSU0988
Alternate gene names: NA
Gene position: 1063766-1065799 (Clockwise)
Preceding gene: 39996090
Following gene: 39996092
Centisome position: 27.89
GC content: 67.85
Gene sequence:
>2034_bases ATGCCCATAGTACCGATACCGGATCTTGACGACAAACGATACGCCGACCTGGTGCGGGAGGCAGTGGCGAGCCTTGCGGT GCGCGCACCGGCGTGGACCGACCACAACGCATCGGACCCGGGGATCACATTGGTGGAGCTCTTCGCCTGGCTGGCGGAGA TGCAGATCTACGGGCTCAACTGCCTTACCCCCGACCACTACCGGACCTTCCTCCGTCTCGTGGGTATCCGGCCGGTTCCG GCAGTGCCCGCCACCGTGGCCCTGACCCTCTCATCCACCGCCGGACGGGAGTTGATGATCCCGCGAGGTACGCGCCTCAC GGCCGAGACGGGAGGGGAACCCCTTCCCTTCGAGACGACGGCCGACCTGTTCCTGCTGAACAACCGGATCGCTGCCGTCA TCAGCGCCTGGGGCGGCGGCTTCCGCAATGTCACCGATGCCAATGCCCGCGATGCCTTCTTTTTCCCTGCCTTCGGCGAG CAGCCGGCACCGGGGGGCACGCTCCTCATCGCCTTTGAGCGGATGCTTCCGGCAGGGCGGGAGGTGCGCCTCGCCATCGA TCTCTACGAAGCAGACCTGCCCCCCGTGGGTGCCCACCGGGGCGAACCGGCCGCCGTCGTACCCCCGGTGGATCTGGTCT GGGAGTATTCCACGGAGGCCGGTTACCGTCGGCTCGATCTGCTGGAGGACGGCACCACCGGCCTGACCCGCTCCGGACAG ATTCTCTTTTCAGTGCCTGCCGACATGACGGCGACCACCTCGCCTTACCTGCCGGCAACGGTGCCTGCGCCGCGCTTTCC CATGATCCGCTGTCGCCTGCCGGAAGAGAGCACCGCCGTGCCGCTGCCTTCCGAGGGTCTGTCGGCATGCCGCCGCGCCG CCGCCCGGCAGGGGACGGGCTTCTATGAGATACCTCCGCGCATCGACTCCATCCGCCTCAATACGGTGACGGCGCGCCAA GCGGTATCGGTGGTGGACGAGAACCTTGTCTCTTCATCCGGCACCGACTGGGGCAATGGCATGCCGGGACAGGTAGTTTC CCTTGCCCGGCGGCCGGCCATGGAGGGGAGCCTCAGGGTCAGGGTCCTGACCGGCACCGATTGGGAAGAGTGGGCCGAAC GCGACAACCTGGACGCCTCGGGGCCCACGGACCGGCATTTCGTACTCGACCCGGCGGTCGGTACCATCCTTTTCGGTGAT GGCCGCAACGGGCGGGTTTTGCCGGAGGGGGCTCGGGTGCGGGCCGACTACCTGTCAGGCGGGGGCGCGGCGGGAAACCT GAGGCCCCTGGCATCGTGGCGCTTCGATGATCCCCTGCTGGCGGACCTTGCCGCGCGCAATGACGCGTCCGCCAGCGGCG GCAGAGACGCCGAGCCGCTCGAGGAGGCCATTGCCCGCGCCCCCCTGGAACTGCGGGAGGTGGACCGGGCCATAACCTCC GATGATTTCGAGTATCTGGCGCTGAATACCCCCGGTCTCCGGGTGGCCCGCGCCCGGGCGCTTCCCCTCTGGGAGCCGGA AGCGCCGGAGGATCGTCCTGTGCCGGCCACGGTGACCGTGGTCGTGGTCCCCTGGTCCTTTACCCCGCGGCCGTATCCCG GCCCACGGTTCCTGCGCGCGGTGTGCGACCACCTGGATCGCCACCGGCTGGTGACGACCCGCGTCAGGGTGATCCCTCCC CTCTACGCGCAGGTGACGGTCAGAACACGGGTCAGCGCCGGTGAAGGGGTACGTCCCGAGGAGTTGCGAGCGCGGGTGGC CGAACGGCTTCTGGAGTTTCTTCATCCCCTGAAGGGGGGTGAGGACGGGACGGGGTGGCCTTTTGGCAGAGGGGTCTACC GTTCGGAGATCATTGCAGCCATCAGGGAGGTGAGCGGTGTGGAATGCGTGCTGGAGACGACGCTTTCGGGCGATACGTGC ACGCGGGTCGACGGCGAGGGCAACCTGATGATAGACCGGGACGCCCTGGTCTATTCCGAACGGCACGAGGTGGACGTGAC TGCCCGCTCCGGCCGGTGCACCGTCACGTACTGA
Upstream 100 bases:
>100_bases TGACGCGGCCGGTGGACCCCTATCTGCTCGTTTCCAGCGGAGACCATCGGGTCGCGGCACGGGCCGGCGACGTATAGCAC CATGCGGGAGTGAGAGCGTT
Downstream 100 bases:
>100_bases CACGGGAGACACGGCGTGGAAGACAACGAGTACACCATAATCCATGTGGCGAGCGGCGAGGCATGGGCCGCCGGGGCAGC CACCAACGGCCTGGTGGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 677; Mature: 676
Protein sequence:
>677_residues MPIVPIPDLDDKRYADLVREAVASLAVRAPAWTDHNASDPGITLVELFAWLAEMQIYGLNCLTPDHYRTFLRLVGIRPVP AVPATVALTLSSTAGRELMIPRGTRLTAETGGEPLPFETTADLFLLNNRIAAVISAWGGGFRNVTDANARDAFFFPAFGE QPAPGGTLLIAFERMLPAGREVRLAIDLYEADLPPVGAHRGEPAAVVPPVDLVWEYSTEAGYRRLDLLEDGTTGLTRSGQ ILFSVPADMTATTSPYLPATVPAPRFPMIRCRLPEESTAVPLPSEGLSACRRAAARQGTGFYEIPPRIDSIRLNTVTARQ AVSVVDENLVSSSGTDWGNGMPGQVVSLARRPAMEGSLRVRVLTGTDWEEWAERDNLDASGPTDRHFVLDPAVGTILFGD GRNGRVLPEGARVRADYLSGGGAAGNLRPLASWRFDDPLLADLAARNDASASGGRDAEPLEEAIARAPLELREVDRAITS DDFEYLALNTPGLRVARARALPLWEPEAPEDRPVPATVTVVVVPWSFTPRPYPGPRFLRAVCDHLDRHRLVTTRVRVIPP LYAQVTVRTRVSAGEGVRPEELRARVAERLLEFLHPLKGGEDGTGWPFGRGVYRSEIIAAIREVSGVECVLETTLSGDTC TRVDGEGNLMIDRDALVYSERHEVDVTARSGRCTVTY
Sequences:
>Translated_677_residues MPIVPIPDLDDKRYADLVREAVASLAVRAPAWTDHNASDPGITLVELFAWLAEMQIYGLNCLTPDHYRTFLRLVGIRPVP AVPATVALTLSSTAGRELMIPRGTRLTAETGGEPLPFETTADLFLLNNRIAAVISAWGGGFRNVTDANARDAFFFPAFGE QPAPGGTLLIAFERMLPAGREVRLAIDLYEADLPPVGAHRGEPAAVVPPVDLVWEYSTEAGYRRLDLLEDGTTGLTRSGQ ILFSVPADMTATTSPYLPATVPAPRFPMIRCRLPEESTAVPLPSEGLSACRRAAARQGTGFYEIPPRIDSIRLNTVTARQ AVSVVDENLVSSSGTDWGNGMPGQVVSLARRPAMEGSLRVRVLTGTDWEEWAERDNLDASGPTDRHFVLDPAVGTILFGD GRNGRVLPEGARVRADYLSGGGAAGNLRPLASWRFDDPLLADLAARNDASASGGRDAEPLEEAIARAPLELREVDRAITS DDFEYLALNTPGLRVARARALPLWEPEAPEDRPVPATVTVVVVPWSFTPRPYPGPRFLRAVCDHLDRHRLVTTRVRVIPP LYAQVTVRTRVSAGEGVRPEELRARVAERLLEFLHPLKGGEDGTGWPFGRGVYRSEIIAAIREVSGVECVLETTLSGDTC TRVDGEGNLMIDRDALVYSERHEVDVTARSGRCTVTY >Mature_676_residues PIVPIPDLDDKRYADLVREAVASLAVRAPAWTDHNASDPGITLVELFAWLAEMQIYGLNCLTPDHYRTFLRLVGIRPVPA VPATVALTLSSTAGRELMIPRGTRLTAETGGEPLPFETTADLFLLNNRIAAVISAWGGGFRNVTDANARDAFFFPAFGEQ PAPGGTLLIAFERMLPAGREVRLAIDLYEADLPPVGAHRGEPAAVVPPVDLVWEYSTEAGYRRLDLLEDGTTGLTRSGQI LFSVPADMTATTSPYLPATVPAPRFPMIRCRLPEESTAVPLPSEGLSACRRAAARQGTGFYEIPPRIDSIRLNTVTARQA VSVVDENLVSSSGTDWGNGMPGQVVSLARRPAMEGSLRVRVLTGTDWEEWAERDNLDASGPTDRHFVLDPAVGTILFGDG RNGRVLPEGARVRADYLSGGGAAGNLRPLASWRFDDPLLADLAARNDASASGGRDAEPLEEAIARAPLELREVDRAITSD DFEYLALNTPGLRVARARALPLWEPEAPEDRPVPATVTVVVVPWSFTPRPYPGPRFLRAVCDHLDRHRLVTTRVRVIPPL YAQVTVRTRVSAGEGVRPEELRARVAERLLEFLHPLKGGEDGTGWPFGRGVYRSEIIAAIREVSGVECVLETTLSGDTCT RVDGEGNLMIDRDALVYSERHEVDVTARSGRCTVTY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73636; Mature: 73505
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIVPIPDLDDKRYADLVREAVASLAVRAPAWTDHNASDPGITLVELFAWLAEMQIYGLN CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCC CLTPDHYRTFLRLVGIRPVPAVPATVALTLSSTAGRELMIPRGTRLTAETGGEPLPFETT CCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEECCCCCCCCCCCCC ADLFLLNNRIAAVISAWGGGFRNVTDANARDAFFFPAFGEQPAPGGTLLIAFERMLPAGR CCEEEECCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEHHCCCCC EVRLAIDLYEADLPPVGAHRGEPAAVVPPVDLVWEYSTEAGYRRLDLLEDGTTGLTRSGQ EEEEEEEEEECCCCCCCCCCCCCCEECCCHHEEEEECCCCCCEEEEEECCCCCCCCCCCC ILFSVPADMTATTSPYLPATVPAPRFPMIRCRLPEESTAVPLPSEGLSACRRAAARQGTG EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC FYEIPPRIDSIRLNTVTARQAVSVVDENLVSSSGTDWGNGMPGQVVSLARRPAMEGSLRV EEECCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEE RVLTGTDWEEWAERDNLDASGPTDRHFVLDPAVGTILFGDGRNGRVLPEGARVRADYLSG EEEECCCHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCC GGAAGNLRPLASWRFDDPLLADLAARNDASASGGRDAEPLEEAIARAPLELREVDRAITS CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCC DDFEYLALNTPGLRVARARALPLWEPEAPEDRPVPATVTVVVVPWSFTPRPYPGPRFLRA CCCEEEEECCCCCEEEHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHH VCDHLDRHRLVTTRVRVIPPLYAQVTVRTRVSAGEGVRPEELRARVAERLLEFLHPLKGG HHHHHHCCCEEEEHHEECCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC EDGTGWPFGRGVYRSEIIAAIREVSGVECVLETTLSGDTCTRVDGEGNLMIDRDALVYSE CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCEEEECCCEEECC RHEVDVTARSGRCTVTY CCCEEEEECCCEEEEEC >Mature Secondary Structure PIVPIPDLDDKRYADLVREAVASLAVRAPAWTDHNASDPGITLVELFAWLAEMQIYGLN CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEECCC CLTPDHYRTFLRLVGIRPVPAVPATVALTLSSTAGRELMIPRGTRLTAETGGEPLPFETT CCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEECCCCCEEECCCCCCCCCCCCC ADLFLLNNRIAAVISAWGGGFRNVTDANARDAFFFPAFGEQPAPGGTLLIAFERMLPAGR CCEEEECCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEEHHCCCCC EVRLAIDLYEADLPPVGAHRGEPAAVVPPVDLVWEYSTEAGYRRLDLLEDGTTGLTRSGQ EEEEEEEEEECCCCCCCCCCCCCCEECCCHHEEEEECCCCCCEEEEEECCCCCCCCCCCC ILFSVPADMTATTSPYLPATVPAPRFPMIRCRLPEESTAVPLPSEGLSACRRAAARQGTG EEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC FYEIPPRIDSIRLNTVTARQAVSVVDENLVSSSGTDWGNGMPGQVVSLARRPAMEGSLRV EEECCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEE RVLTGTDWEEWAERDNLDASGPTDRHFVLDPAVGTILFGDGRNGRVLPEGARVRADYLSG EEEECCCHHHHHHHCCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCC GGAAGNLRPLASWRFDDPLLADLAARNDASASGGRDAEPLEEAIARAPLELREVDRAITS CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCC DDFEYLALNTPGLRVARARALPLWEPEAPEDRPVPATVTVVVVPWSFTPRPYPGPRFLRA CCCEEEEECCCCCEEEHHCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHH VCDHLDRHRLVTTRVRVIPPLYAQVTVRTRVSAGEGVRPEELRARVAERLLEFLHPLKGG HHHHHHCCCEEEEHHEECCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCC EDGTGWPFGRGVYRSEIIAAIREVSGVECVLETTLSGDTCTRVDGEGNLMIDRDALVYSE CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCEEEECCCEEECC RHEVDVTARSGRCTVTY CCCEEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA