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The map label for this gene is yedQ [H]

Identifier: 39996055

GI number: 39996055

Start: 1024618

End: 1025910

Strand: Direct

Name: yedQ [H]

Synonym: GSU0952

Alternate gene names: 39996055

Gene position: 1024618-1025910 (Clockwise)

Preceding gene: 39996049

Following gene: 39996058

Centisome position: 26.86

GC content: 55.53

Gene sequence:

>1293_bases
ATGTCGGCAGAAAAAGAACAGACTGTGGTGGAACGAGTAAAGAGCGCCGACTATTTCTTCCGATCCCTGGTTCTGGTCGC
CGCCCTATCCATTGGGGCAATTTTGATGCTTTGCTGTTACGGCACGTACAAAATTTATTTAAACCATACCATCGCAACCG
CCGAGGAAGATGCGGTGCAGGTGAGCGAGGCACTGCTGAAACATGAAGAAGTAAATATTATGGAGGGAGATAAGGAAAAG
GGTTTTACCGTGACGATTTCCCCGGAAGAACTGCCTCACGTGGACCAGCGGCTGCGGCAGTTCCTCCGCCCCTTCGGCAT
CGTGAAGATCAAGATCTACAACGAGAAGCGAACCATTGTCTACAGTACTGACAGCGCCATTATTGGAAAGCACGACAAGA
ATAACGTCCGCCTTGTCCGTGCCTTGCTCGGATTTGTCGATTCCAAGCTGGAGAAGTCAGAGGATGTGCTTGATATGGCC
GAAGAGAAGGTGATTGAGGTTGATGTCGTTGAAACGTACGTTCCTATCATAGCCGATGACGGAAGGGTGATCGGCGCCTT
CGAGATATACATGGATGTCTCCCGGTACACGAGCGATGTCCGCAATGTGGTGGTGTCCACGTTCGCAATCCTCCTGGTTG
TATTGCTGTCCGTATTCGGGTGTTCCTTTTTCGTGATACGGCGGATGACCGAACGCCTCAGGGAAGCAGAGGCGGAATTG
AAGCGGATTGCGGTTACTGACCCCCTCACCGGTATTGCCAACCGGCGCCAGATCATTCACCGTGCCACCGAGGAGTTTGC
TCGGCAGATGAGAAGGAAGCAGCAGCGGACCGCGGTTCCCAGCCTGGGGATTATCATGGCGGATGTGGACCATTTTAAGC
AGATCAATGATACCTACGGTCACAGTGCCGGTGATGACGTCTTGAGGGAGATAGCCTCGCGGATCGGCTCCGTCCTTCGG
CAGTATGATGCCGTGGGACGTTACGGCGGGGAGGAGTTCCTGGTCATCCTCTCCGAGACTGAGTTGGAAGAGACGTGGCA
TATTGCCGAGAGGATTCGACGCCGGGTGGCGGATGATCCGGTGGTCGTCGATAACCAGGTGATCCGGGTTTCCGCCAGTC
TTGGCATCGCCACGGTCCTTGCCGGTGAGGCAGACTACCGGCCCGCGCTTGAGCGTGCCGATAAGGGGCTCTATCTGGCA
AAGACTGCGGGGCGCAACCGGGTCATGTGTGCCGGCGACGAACAATGCCGCGGCGAACGATCCCGGCCCAAGCTGGAGGC
CGTCAAAGGTTAG

Upstream 100 bases:

>100_bases
AACTCCGCTTTGTGCCTTCCGTTTTCGCTCAAGTATAGTGGAAATCGGACGATACGTATGAGAAGCAAGAAATGCCTAAA
AATGAAGGGATGCGCACATC

Downstream 100 bases:

>100_bases
GGTTATCTGTCTGTTGCTTTTAAGTTGTTGATTTATGCTGGAAGTAAGGGGGCGGGTGCAGGAAGGGACTGTCAGCAGAT
GGACATCATCCTGGGGTTCC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MSAEKEQTVVERVKSADYFFRSLVLVAALSIGAILMLCCYGTYKIYLNHTIATAEEDAVQVSEALLKHEEVNIMEGDKEK
GFTVTISPEELPHVDQRLRQFLRPFGIVKIKIYNEKRTIVYSTDSAIIGKHDKNNVRLVRALLGFVDSKLEKSEDVLDMA
EEKVIEVDVVETYVPIIADDGRVIGAFEIYMDVSRYTSDVRNVVVSTFAILLVVLLSVFGCSFFVIRRMTERLREAEAEL
KRIAVTDPLTGIANRRQIIHRATEEFARQMRRKQQRTAVPSLGIIMADVDHFKQINDTYGHSAGDDVLREIASRIGSVLR
QYDAVGRYGGEEFLVILSETELEETWHIAERIRRRVADDPVVVDNQVIRVSASLGIATVLAGEADYRPALERADKGLYLA
KTAGRNRVMCAGDEQCRGERSRPKLEAVKG

Sequences:

>Translated_430_residues
MSAEKEQTVVERVKSADYFFRSLVLVAALSIGAILMLCCYGTYKIYLNHTIATAEEDAVQVSEALLKHEEVNIMEGDKEK
GFTVTISPEELPHVDQRLRQFLRPFGIVKIKIYNEKRTIVYSTDSAIIGKHDKNNVRLVRALLGFVDSKLEKSEDVLDMA
EEKVIEVDVVETYVPIIADDGRVIGAFEIYMDVSRYTSDVRNVVVSTFAILLVVLLSVFGCSFFVIRRMTERLREAEAEL
KRIAVTDPLTGIANRRQIIHRATEEFARQMRRKQQRTAVPSLGIIMADVDHFKQINDTYGHSAGDDVLREIASRIGSVLR
QYDAVGRYGGEEFLVILSETELEETWHIAERIRRRVADDPVVVDNQVIRVSASLGIATVLAGEADYRPALERADKGLYLA
KTAGRNRVMCAGDEQCRGERSRPKLEAVKG
>Mature_429_residues
SAEKEQTVVERVKSADYFFRSLVLVAALSIGAILMLCCYGTYKIYLNHTIATAEEDAVQVSEALLKHEEVNIMEGDKEKG
FTVTISPEELPHVDQRLRQFLRPFGIVKIKIYNEKRTIVYSTDSAIIGKHDKNNVRLVRALLGFVDSKLEKSEDVLDMAE
EKVIEVDVVETYVPIIADDGRVIGAFEIYMDVSRYTSDVRNVVVSTFAILLVVLLSVFGCSFFVIRRMTERLREAEAELK
RIAVTDPLTGIANRRQIIHRATEEFARQMRRKQQRTAVPSLGIIMADVDHFKQINDTYGHSAGDDVLREIASRIGSVLRQ
YDAVGRYGGEEFLVILSETELEETWHIAERIRRRVADDPVVVDNQVIRVSASLGIATVLAGEADYRPALERADKGLYLAK
TAGRNRVMCAGDEQCRGERSRPKLEAVKG

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=213, Percent_Identity=38.9671361502347, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI145693134, Length=178, Percent_Identity=41.0112359550562, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=38.5026737967914, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787262, Length=201, Percent_Identity=34.8258706467662, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1786584, Length=202, Percent_Identity=32.1782178217822, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1788381, Length=208, Percent_Identity=33.6538461538462, Blast_Score=98, Evalue=8e-22,
Organism=Escherichia coli, GI87081977, Length=230, Percent_Identity=31.304347826087, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=35.5029585798817, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787802, Length=202, Percent_Identity=29.7029702970297, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787541, Length=174, Percent_Identity=32.183908045977, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1788085, Length=188, Percent_Identity=28.7234042553192, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081974, Length=305, Percent_Identity=25.5737704918033, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=32, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI1787056, Length=238, Percent_Identity=29.8319327731092, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 48429; Mature: 48298

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAEKEQTVVERVKSADYFFRSLVLVAALSIGAILMLCCYGTYKIYLNHTIATAEEDAVQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCHHHHHH
VSEALLKHEEVNIMEGDKEKGFTVTISPEELPHVDQRLRQFLRPFGIVKIKIYNEKRTIV
HHHHHHHHHHCCCCCCCCCCCEEEEECCHHCCHHHHHHHHHHCCCCEEEEEEECCCEEEE
YSTDSAIIGKHDKNNVRLVRALLGFVDSKLEKSEDVLDMAEEKVIEVDVVETYVPIIADD
EECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHCEEECC
GRVIGAFEIYMDVSRYTSDVRNVVVSTFAILLVVLLSVFGCSFFVIRRMTERLREAEAEL
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRIAVTDPLTGIANRRQIIHRATEEFARQMRRKQQRTAVPSLGIIMADVDHFKQINDTYG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
HSAGDDVLREIASRIGSVLRQYDAVGRYGGEEFLVILSETELEETWHIAERIRRRVADDP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC
VVVDNQVIRVSASLGIATVLAGEADYRPALERADKGLYLAKTAGRNRVMCAGDEQCRGER
EEECCCEEEEECCCCCHHHCCCCCCCCHHHHHCCCCEEEEECCCCCEEEECCCHHHCCCC
SRPKLEAVKG
CCCCHHCCCC
>Mature Secondary Structure 
SAEKEQTVVERVKSADYFFRSLVLVAALSIGAILMLCCYGTYKIYLNHTIATAEEDAVQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCHHHHHH
VSEALLKHEEVNIMEGDKEKGFTVTISPEELPHVDQRLRQFLRPFGIVKIKIYNEKRTIV
HHHHHHHHHHCCCCCCCCCCCEEEEECCHHCCHHHHHHHHHHCCCCEEEEEEECCCEEEE
YSTDSAIIGKHDKNNVRLVRALLGFVDSKLEKSEDVLDMAEEKVIEVDVVETYVPIIADD
EECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHCEEECC
GRVIGAFEIYMDVSRYTSDVRNVVVSTFAILLVVLLSVFGCSFFVIRRMTERLREAEAEL
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRIAVTDPLTGIANRRQIIHRATEEFARQMRRKQQRTAVPSLGIIMADVDHFKQINDTYG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
HSAGDDVLREIASRIGSVLRQYDAVGRYGGEEFLVILSETELEETWHIAERIRRRVADDP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC
VVVDNQVIRVSASLGIATVLAGEADYRPALERADKGLYLAKTAGRNRVMCAGDEQCRGER
EEECCCEEEEECCCCCHHHCCCCCCCCHHHHHCCCCEEEEECCCCCEEEECCCHHHCCCC
SRPKLEAVKG
CCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA