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The map label for this gene is rpsU-1

Identifier: 39996009

GI number: 39996009

Start: 972287

End: 972487

Strand: Reverse

Name: rpsU-1

Synonym: GSU0906

Alternate gene names: 39996009

Gene position: 972487-972287 (Counterclockwise)

Preceding gene: 39996010

Following gene: 39996008

Centisome position: 25.5

GC content: 55.22

Gene sequence:

>201_bases
GTGCAGGTAAGCGTTCAGGGAAACGATGTGGACAAGGCCCTCCGGCTGCTGAAGCGCAAGCTCCAGACCGAAGGGTTCTT
CAAAGAGATCAAAAAACGCAAGCATTACGAAAAGCCCTCGGTCAAGAAGAAGCGCAAGCAGATGGAGGCCGAGCGCAAGA
GAAGAAAGGCCCAGCGGTTCAGAAAGCCCGACAGGGACTGA

Upstream 100 bases:

>100_bases
GTGCTTTAAAGGAATCCCTTGGCCATTTTTATTTTCGGGAGGGCAGCGGCAACTAGCCACGGACGACCCAACGTCTACCG
ACCGAGGAAGGAGAGATCAC

Downstream 100 bases:

>100_bases
CGCCGGACAGGATGGGAAACAGGCCGCGCAGCGGCTTGAAGCCGGGACCCCCCCCGGACATATCACGCGAAAGCAGGAGA
ATGAACACCATGGCAAAAGG

Product: 30S ribosomal protein S21

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MQVSVQGNDVDKALRLLKRKLQTEGFFKEIKKRKHYEKPSVKKKRKQMEAERKRRKAQRFRKPDRD

Sequences:

>Translated_66_residues
MQVSVQGNDVDKALRLLKRKLQTEGFFKEIKKRKHYEKPSVKKKRKQMEAERKRRKAQRFRKPDRD
>Mature_66_residues
MQVSVQGNDVDKALRLLKRKLQTEGFFKEIKKRKHYEKPSVKKKRKQMEAERKRRKAQRFRKPDRD

Specific function: Unknown

COG id: COG0828

COG function: function code J; Ribosomal protein S21

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S21P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS211_GEOSL (Q74EQ6)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_951960.1
- ProteinModelPortal:   Q74EQ6
- SMR:   Q74EQ6
- GeneID:   2685427
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU0906
- NMPDR:   fig|243231.1.peg.898
- TIGR:   GSU0906
- HOGENOM:   HBG708268
- OMA:   REMKERR
- ProtClustDB:   PRK00270
- BioCyc:   GSUL243231:GSU_0906-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00358
- InterPro:   IPR001911
- PRINTS:   PR00976
- ProDom:   PD005521
- TIGRFAMs:   TIGR00030

Pfam domain/function: PF01165 Ribosomal_S21

EC number: NA

Molecular weight: Translated: 8127; Mature: 8127

Theoretical pI: Translated: 11.60; Mature: 11.60

Prosite motif: PS01181 RIBOSOMAL_S21

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVSVQGNDVDKALRLLKRKLQTEGFFKEIKKRKHYEKPSVKKKRKQMEAERKRRKAQRF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
RKPDRD
CCCCCC
>Mature Secondary Structure
MQVSVQGNDVDKALRLLKRKLQTEGFFKEIKKRKHYEKPSVKKKRKQMEAERKRRKAQRF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
RKPDRD
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA