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The map label for this gene is ydeM [C]

Identifier: 39995990

GI number: 39995990

Start: 944454

End: 945986

Strand: Direct

Name: ydeM [C]

Synonym: GSU0884

Alternate gene names: 39995990

Gene position: 944454-945986 (Clockwise)

Preceding gene: 39995983

Following gene: 39995992

Centisome position: 24.76

GC content: 67.91

Gene sequence:

>1533_bases
ATGGCCCCTTTCTCGTTCTGCTCTCACAAAAACGGTACGAACTGTCCATCCCCGGCCGGCGGACGGCCACGGAAGCAGCC
ACGAAGCCCCCGTTTTCCGGACCGCCATGGACTTTGGCGTCTTCGTCCATGGTGCTGGGGCGATGCGGCAATCTCTGAGA
TAGTTATTTCTTCATCCCTTTTCGGAGTCCATCCCATGATCCTCTCCCGCTACGTCTCCTCTTACCCTTGTTCGGAATCA
CCCGACCACGTCATCCTCTTCTCCTGCCGTACCGGCGCGGTGGTGCGGGGTTCCCGGTCCACCCTCGACGCGGCCCAGGC
CGGCACCCTTTCTCCTGCCGCGGCCGAGACCCTGGAGAAGCACGGCTTTCTCACGCCCGGCCCCGAGGCCGAGCGGGCGG
AGATGCTCGCCTGGTTCGACCGGATCAACGCCGAGCGGCGCCGGGCCGGCATGGTGGCGGTGCTCACGCGGCGCTGCAAC
CTGGCCTGTCCCTACTGCTTCGAGGGAGGGCAGGCGCCGGAAGGCGACATGAGCGAGGAGACCGCGGACCTCCTGGCCGC
GATGATCGAGCGGGAGTACCTGGCAAAGGGGTGGCGGGTGGATATGGATTTCTACGGCGGCGAGCCGCTGCTCCGGCCCG
ACCTGATCAGGCGGATCGCGGAGCCGCTGCGAGCCGCGGGGGGCGGGCTGTTCCACGGCAACATGGTCAGCAACGGCTCC
CTGCTGAACCGGGCGGTGATGACGGACCTGACAGCTTTGGGGATCGAGTCGGTCAAAGTGACCCTGGACGGTCCGCCCCA
GGTGCACGACCGGTACCGCCCCTACGGCGGCGGCGCCGGGAGCTTTCACGACATCCTGCGGGGAATGGGCGAGGTGGTCG
ATCTGGTGAAGATCCACGTGGGAGGGAACTTTACCCGGGAGACCTGGCGGGAATACCCGGCGCTCCTGGACCTGCTGCTG
GCAGAGGGGTTCACCCCGGACCGGCTCGGCACGGTGCGCTTCACCCCGGCCGTGGGGGGGAAGGGGAGCGGAGCGTTGCC
CCACTTCGCCGAGGGGTGCGTGACCTGCGAGGAGCCGTGGCTGGCCGAGGCGGAGCTGGTGCTGCGGGAGGAGTTGATGA
AGCGGGGCTTCGGCGTGCCCAAGCCCGGCCCCTTTTCCTGCATGATCGAGCTAGAGAGCGACCTGGCCGTGGACGCCGAC
GGCCGCTGCTACAAGTGCCCGGCCTTCATGGGGCACGAGGGGTATGCCGTGGGCGACCTGCGCGCCGGCTTCAGCCCTAC
GGCACCGTCCTACGGCTACGATATCTGGCGCCGGGAGGAGTGCCTGGACTGCTCCTGGCTCCCCCTCTGCTTCGGCGGCT
GCCGCTTCATGAAGCTGGTGGAGGCCGGGGCGGTGACCGGCGTGTCGTGCCAGCGGGAGTACCTGGCCGGCACGGTGGAG
ACGATGGTGCGCCGGGGGGCTGGCGGTGGGCAGCTCAGTCCAGCAGTGAATCCAGGTGATCGAAGTCCAGAATCTCTTCG
GCCTGGGCCTTGA

Upstream 100 bases:

>100_bases
CCGACCCCCACAGAGGGGCGGGCGGCTTGCTGCACGTCGACGATTGCCGCTACGAGGGTCCAGCCGGAGGAGTAGAAAAC
CGCAGAACGAGAAAGGGGCC

Downstream 100 bases:

>100_bases
CCAGCTCGATCTTTTCGGTGTCCTCGGCGCTGATCTTTGAGACGTGGTGCTTCATGGCCGAGAAGACGTCGGCGGTGGTC
TCGTGGATGCGGATGACGGG

Product: radical SAM protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Arylsulfatase Regulator; Radical SAM Family Protein; Arylsulfatase Regulator Fe-S Oxidoreductase; AstB/ChuR-Related Protein; Heme Biosynthesis Related Protein; Arylsulfatase Regulatory Protein; Fe-S Oxidoreductase; Radical SAM; Heme Biosynthesis Family Protein; Elongator /MiaB/NifB; Transcriptional Regulator; Radical SAM Superfamily Protein; Heme Biosynthesis

Number of amino acids: Translated: 510; Mature: 509

Protein sequence:

>510_residues
MAPFSFCSHKNGTNCPSPAGGRPRKQPRSPRFPDRHGLWRLRPWCWGDAAISEIVISSSLFGVHPMILSRYVSSYPCSES
PDHVILFSCRTGAVVRGSRSTLDAAQAGTLSPAAAETLEKHGFLTPGPEAERAEMLAWFDRINAERRRAGMVAVLTRRCN
LACPYCFEGGQAPEGDMSEETADLLAAMIEREYLAKGWRVDMDFYGGEPLLRPDLIRRIAEPLRAAGGGLFHGNMVSNGS
LLNRAVMTDLTALGIESVKVTLDGPPQVHDRYRPYGGGAGSFHDILRGMGEVVDLVKIHVGGNFTRETWREYPALLDLLL
AEGFTPDRLGTVRFTPAVGGKGSGALPHFAEGCVTCEEPWLAEAELVLREELMKRGFGVPKPGPFSCMIELESDLAVDAD
GRCYKCPAFMGHEGYAVGDLRAGFSPTAPSYGYDIWRREECLDCSWLPLCFGGCRFMKLVEAGAVTGVSCQREYLAGTVE
TMVRRGAGGGQLSPAVNPGDRSPESLRPGP

Sequences:

>Translated_510_residues
MAPFSFCSHKNGTNCPSPAGGRPRKQPRSPRFPDRHGLWRLRPWCWGDAAISEIVISSSLFGVHPMILSRYVSSYPCSES
PDHVILFSCRTGAVVRGSRSTLDAAQAGTLSPAAAETLEKHGFLTPGPEAERAEMLAWFDRINAERRRAGMVAVLTRRCN
LACPYCFEGGQAPEGDMSEETADLLAAMIEREYLAKGWRVDMDFYGGEPLLRPDLIRRIAEPLRAAGGGLFHGNMVSNGS
LLNRAVMTDLTALGIESVKVTLDGPPQVHDRYRPYGGGAGSFHDILRGMGEVVDLVKIHVGGNFTRETWREYPALLDLLL
AEGFTPDRLGTVRFTPAVGGKGSGALPHFAEGCVTCEEPWLAEAELVLREELMKRGFGVPKPGPFSCMIELESDLAVDAD
GRCYKCPAFMGHEGYAVGDLRAGFSPTAPSYGYDIWRREECLDCSWLPLCFGGCRFMKLVEAGAVTGVSCQREYLAGTVE
TMVRRGAGGGQLSPAVNPGDRSPESLRPGP
>Mature_509_residues
APFSFCSHKNGTNCPSPAGGRPRKQPRSPRFPDRHGLWRLRPWCWGDAAISEIVISSSLFGVHPMILSRYVSSYPCSESP
DHVILFSCRTGAVVRGSRSTLDAAQAGTLSPAAAETLEKHGFLTPGPEAERAEMLAWFDRINAERRRAGMVAVLTRRCNL
ACPYCFEGGQAPEGDMSEETADLLAAMIEREYLAKGWRVDMDFYGGEPLLRPDLIRRIAEPLRAAGGGLFHGNMVSNGSL
LNRAVMTDLTALGIESVKVTLDGPPQVHDRYRPYGGGAGSFHDILRGMGEVVDLVKIHVGGNFTRETWREYPALLDLLLA
EGFTPDRLGTVRFTPAVGGKGSGALPHFAEGCVTCEEPWLAEAELVLREELMKRGFGVPKPGPFSCMIELESDLAVDADG
RCYKCPAFMGHEGYAVGDLRAGFSPTAPSYGYDIWRREECLDCSWLPLCFGGCRFMKLVEAGAVTGVSCQREYLAGTVET
MVRRGAGGGQLSPAVNPGDRSPESLRPGP

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55407; Mature: 55276

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPFSFCSHKNGTNCPSPAGGRPRKQPRSPRFPDRHGLWRLRPWCWGDAAISEIVISSSL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHH
FGVHPMILSRYVSSYPCSESPDHVILFSCRTGAVVRGSRSTLDAAQAGTLSPAAAETLEK
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEECCCCHHHHHHCCCCCHHHHHHHHH
HGFLTPGPEAERAEMLAWFDRINAERRRAGMVAVLTRRCNLACPYCFEGGQAPEGDMSEE
CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCHHH
TADLLAAMIEREYLAKGWRVDMDFYGGEPLLRPDLIRRIAEPLRAAGGGLFHGNMVSNGS
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCH
LLNRAVMTDLTALGIESVKVTLDGPPQVHDRYRPYGGGAGSFHDILRGMGEVVDLVKIHV
HHHHHHHHHHHHHCCEEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEC
GGNFTRETWREYPALLDLLLAEGFTPDRLGTVRFTPAVGGKGSGALPHFAEGCVTCEEPW
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCC
LAEAELVLREELMKRGFGVPKPGPFSCMIELESDLAVDADGRCYKCPAFMGHEGYAVGDL
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEECCCCCEEECCCCCCCCCCEEECC
RAGFSPTAPSYGYDIWRREECLDCSWLPLCFGGCRFMKLVEAGAVTGVSCQREYLAGTVE
CCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
TMVRRGAGGGQLSPAVNPGDRSPESLRPGP
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
APFSFCSHKNGTNCPSPAGGRPRKQPRSPRFPDRHGLWRLRPWCWGDAAISEIVISSSL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHH
FGVHPMILSRYVSSYPCSESPDHVILFSCRTGAVVRGSRSTLDAAQAGTLSPAAAETLEK
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEECCCCHHHHHHCCCCCHHHHHHHHH
HGFLTPGPEAERAEMLAWFDRINAERRRAGMVAVLTRRCNLACPYCFEGGQAPEGDMSEE
CCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCHHH
TADLLAAMIEREYLAKGWRVDMDFYGGEPLLRPDLIRRIAEPLRAAGGGLFHGNMVSNGS
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCH
LLNRAVMTDLTALGIESVKVTLDGPPQVHDRYRPYGGGAGSFHDILRGMGEVVDLVKIHV
HHHHHHHHHHHHHCCEEEEEEECCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEC
GGNFTRETWREYPALLDLLLAEGFTPDRLGTVRFTPAVGGKGSGALPHFAEGCVTCEEPW
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHCCCCCCCCC
LAEAELVLREELMKRGFGVPKPGPFSCMIELESDLAVDADGRCYKCPAFMGHEGYAVGDL
HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCEEECCCCCEEECCCCCCCCCCEEECC
RAGFSPTAPSYGYDIWRREECLDCSWLPLCFGGCRFMKLVEAGAVTGVSCQREYLAGTVE
CCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
TMVRRGAGGGQLSPAVNPGDRSPESLRPGP
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA