| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
Click here to switch to the map view.
The map label for this gene is yoaE [H]
Identifier: 39995986
GI number: 39995986
Start: 937790
End: 939805
Strand: Reverse
Name: yoaE [H]
Synonym: GSU0880
Alternate gene names: 39995986
Gene position: 939805-937790 (Counterclockwise)
Preceding gene: 39995987
Following gene: 39995985
Centisome position: 24.64
GC content: 69.79
Gene sequence:
>2016_bases ATGCCCGAACTGAAGCGTTCCGTCTGTCCCTATGACTGCCCCGACACCTGCGGCTTGCTGGTGGAGGTCGAGAACGGCCG TGCGGTGCGCGTGACCGGCGATCCAGACCACCCCTTCACCCGGGGCACCCTCTGCCCCAAGATGCTCCACTATGAAAAGA CGGTCCACTCTTCCCGGCGGCTGACCACTCCGCTCGTGCGGACCGGCCCCAAGGGGAGCGGTTCGTTCCGGCCCGCGTCG TGGGACGAGACCGTTGCCGCCATTGCATCCCGCTGGCGCGAGATCATCGCCGTCCACGGAGCCGAGGCGATCCTCCCCTA TTCCTACGCGGGCACCATGGGACTGGTGCAGCGCAATGCCGGTCACCCCTTCTTCCACCGGCTGGGGGCGTCGCGGCTGG AGCGGACCATCTGCTCACCGGCCAAGGAGGCGGGGTGGAAGGCAGTAATGGGCGATACTCCGGCCCCCCATCCGGACGAA GTGGCGGAGAGCGACCTGGTAATCCTCTGGGGGATCAATGCGGCGGCCACCAATATCCATTTCCTCCACGGAGTGCGCGA GGCCCGCAGGCGGGGAGCCCCTGTCTGGGTGATCGACACCTACCGGACCCCTACGGCCGCTGCAGCCGACCGGGTGATCC TGCCCCGCCCCGGCAGCGACGGAGCACTGGCACTGGGGATGATGCACGTGCTGGCCCGGGACGGCCTGGTGGACCGGGCA TTCCTGGCTGAACGGGTACAGGGGTACGATGAGCTGGCGGAGCGGATTCTCCCGGACTATCCCCCGGAGCGGGTGGCGGC CCTCACGGGCATCCCGGCGGCGGAGATCGAAGAGCTGGCCCGGCGCTACGGCCGGGCGCGCGCCCCCTTCATCCGCCTGG GGAGCGGGCTTTCCCGCTACGGCAACGGGGCCATGACGGTGCGCTGCATCGCGGCCCTGCCCGCCCTGACCGGGGCTTAT GCCGTGCGGGGCGGCGGCTGTCTGGCCTCAACGAGCACCGGTCCCGCCTTTGCCCTGGGAGAGGTGCTGCGTGAGGACTT CATGGCGCGGCCCACCCGCGTCGTGAACATGAACCGGCTCGGCCACGCCCTGACCGGGCTGGCCGACCCGCCGGTCATGT CCCTGTATGTGTACCACTCGAACCCGGCCGCGGTGACCCCGGACCAGAACGAGGTGATCCGGGGGCTCTGCCGGGACGAC CTCTTCACCGTGGTCCACGAGCGGTTCCTGACCGACACGGCCCGTTACGCCGACATCGTGCTGCCGGCCACCTCGTCCCT AGAGCACGCAGACGTGTACCGGGCCTACGGCACCTACTGCATCCAGCGGGCCCACCCTGCCATCCCGCCCGTGGGGGAGA GCAGATCCAACTGGGACACCTTCGCCCTGCTGGCCGGGGCCATGGGGTTCGAGGAGGAGTTTTTCCGCCGGAGCGCCGGG GAGATGATCGACCGGCTCCTGTCGGTCCCCACCGCCATGCGGGCCGGGATCGACCAGGTCCGTTTCGACGCGGGTCTGGC CGTGGAACTCCCCCTGGCCCCCGATGCCCCGCGCATCTTCGCCACTCCCTCGGGCAAGGTGGAGATCCTCAATCCCCGCG AGCCTGAACCACTCCCCCGTCACATTCCTTGCCACGAAGACGCGGGCGAGCTTCCCCTCAGGCTCATGACCGCCCCCACC CCCTACGCCCTGAACGCCTCCTTCTACGAGCAGGAAGAGCTGCGGCAGAAGCAGGGGGGCGCCATGTCGCTCCTCCTGAA CCCGGCCGAGGCAACAGCCCGGAACCTGGCCGAGGGGCAGCGGGTGACCGCCGTCAACGACCGGGGCCGGGTCGCCTTCA TCCTGCGGATCACCGACCGGGTTCCGCCGGGGGTGGCCGTGGCCGAGGGGGTCTGGTGGCTGGAGCACGCCCCGGGCGAC CGGACCGTGAACGCCCTCACCAGCCAACGGCTCACGGACCGGGGCAACGGCAGCACATTCTATGATACGCGGATCGAGGT GCTCCCCGCCCCGTGA
Upstream 100 bases:
>100_bases CAGGGCCGTGTCTGGCTCGAAAGCGCCGAGGGGGCGGGTACCACCTGCTACTTCACCCTCCCGGAGAGTGCCCCGGCCTG ATCCTCCCAGGGAGGCGACC
Downstream 100 bases:
>100_bases CAGCCTTTCCGCAACTTTTTCAACAGCCTGGCTAAAGTTTCCTCATGCATGGCCGATACGTTAACCATGCCTTCATCCGG AAGGCGATCACTCTGCGAGG
Product: molybdopterin oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 671; Mature: 670
Protein sequence:
>671_residues MPELKRSVCPYDCPDTCGLLVEVENGRAVRVTGDPDHPFTRGTLCPKMLHYEKTVHSSRRLTTPLVRTGPKGSGSFRPAS WDETVAAIASRWREIIAVHGAEAILPYSYAGTMGLVQRNAGHPFFHRLGASRLERTICSPAKEAGWKAVMGDTPAPHPDE VAESDLVILWGINAAATNIHFLHGVREARRRGAPVWVIDTYRTPTAAAADRVILPRPGSDGALALGMMHVLARDGLVDRA FLAERVQGYDELAERILPDYPPERVAALTGIPAAEIEELARRYGRARAPFIRLGSGLSRYGNGAMTVRCIAALPALTGAY AVRGGGCLASTSTGPAFALGEVLREDFMARPTRVVNMNRLGHALTGLADPPVMSLYVYHSNPAAVTPDQNEVIRGLCRDD LFTVVHERFLTDTARYADIVLPATSSLEHADVYRAYGTYCIQRAHPAIPPVGESRSNWDTFALLAGAMGFEEEFFRRSAG EMIDRLLSVPTAMRAGIDQVRFDAGLAVELPLAPDAPRIFATPSGKVEILNPREPEPLPRHIPCHEDAGELPLRLMTAPT PYALNASFYEQEELRQKQGGAMSLLLNPAEATARNLAEGQRVTAVNDRGRVAFILRITDRVPPGVAVAEGVWWLEHAPGD RTVNALTSQRLTDRGNGSTFYDTRIEVLPAP
Sequences:
>Translated_671_residues MPELKRSVCPYDCPDTCGLLVEVENGRAVRVTGDPDHPFTRGTLCPKMLHYEKTVHSSRRLTTPLVRTGPKGSGSFRPAS WDETVAAIASRWREIIAVHGAEAILPYSYAGTMGLVQRNAGHPFFHRLGASRLERTICSPAKEAGWKAVMGDTPAPHPDE VAESDLVILWGINAAATNIHFLHGVREARRRGAPVWVIDTYRTPTAAAADRVILPRPGSDGALALGMMHVLARDGLVDRA FLAERVQGYDELAERILPDYPPERVAALTGIPAAEIEELARRYGRARAPFIRLGSGLSRYGNGAMTVRCIAALPALTGAY AVRGGGCLASTSTGPAFALGEVLREDFMARPTRVVNMNRLGHALTGLADPPVMSLYVYHSNPAAVTPDQNEVIRGLCRDD LFTVVHERFLTDTARYADIVLPATSSLEHADVYRAYGTYCIQRAHPAIPPVGESRSNWDTFALLAGAMGFEEEFFRRSAG EMIDRLLSVPTAMRAGIDQVRFDAGLAVELPLAPDAPRIFATPSGKVEILNPREPEPLPRHIPCHEDAGELPLRLMTAPT PYALNASFYEQEELRQKQGGAMSLLLNPAEATARNLAEGQRVTAVNDRGRVAFILRITDRVPPGVAVAEGVWWLEHAPGD RTVNALTSQRLTDRGNGSTFYDTRIEVLPAP >Mature_670_residues PELKRSVCPYDCPDTCGLLVEVENGRAVRVTGDPDHPFTRGTLCPKMLHYEKTVHSSRRLTTPLVRTGPKGSGSFRPASW DETVAAIASRWREIIAVHGAEAILPYSYAGTMGLVQRNAGHPFFHRLGASRLERTICSPAKEAGWKAVMGDTPAPHPDEV AESDLVILWGINAAATNIHFLHGVREARRRGAPVWVIDTYRTPTAAAADRVILPRPGSDGALALGMMHVLARDGLVDRAF LAERVQGYDELAERILPDYPPERVAALTGIPAAEIEELARRYGRARAPFIRLGSGLSRYGNGAMTVRCIAALPALTGAYA VRGGGCLASTSTGPAFALGEVLREDFMARPTRVVNMNRLGHALTGLADPPVMSLYVYHSNPAAVTPDQNEVIRGLCRDDL FTVVHERFLTDTARYADIVLPATSSLEHADVYRAYGTYCIQRAHPAIPPVGESRSNWDTFALLAGAMGFEEEFFRRSAGE MIDRLLSVPTAMRAGIDQVRFDAGLAVELPLAPDAPRIFATPSGKVEILNPREPEPLPRHIPCHEDAGELPLRLMTAPTP YALNASFYEQEELRQKQGGAMSLLLNPAEATARNLAEGQRVTAVNDRGRVAFILRITDRVPPGVAVAEGVWWLEHAPGDR TVNALTSQRLTDRGNGSTFYDTRIEVLPAP
Specific function: Terminal Reductase During Anaerobic Growth On Various Sulfoxide And N-Oxide Compounds (By Similarity). [C]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm Face Of The Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787870, Length=763, Percent_Identity=25.4259501965924, Blast_Score=174, Evalue=2e-44, Organism=Escherichia coli, GI171474008, Length=752, Percent_Identity=26.5957446808511, Blast_Score=172, Evalue=8e-44, Organism=Escherichia coli, GI87081797, Length=759, Percent_Identity=25.9552042160738, Blast_Score=171, Evalue=1e-43, Organism=Escherichia coli, GI3868721, Length=511, Percent_Identity=28.9628180039139, Blast_Score=171, Evalue=1e-43, Organism=Escherichia coli, GI1787231, Length=706, Percent_Identity=23.9376770538244, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI145693196, Length=710, Percent_Identity=25.2112676056338, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI87081994, Length=719, Percent_Identity=23.9221140472879, Blast_Score=115, Evalue=1e-26, Organism=Escherichia coli, GI1788534, Length=495, Percent_Identity=23.6363636363636, Blast_Score=101, Evalue=2e-22, Organism=Escherichia coli, GI3868720, Length=336, Percent_Identity=26.7857142857143, Blast_Score=75, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.8.99.- [C]
Molecular weight: Translated: 73093; Mature: 72962
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPELKRSVCPYDCPDTCGLLVEVENGRAVRVTGDPDHPFTRGTLCPKMLHYEKTVHSSRR CCCHHCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCC LTTPLVRTGPKGSGSFRPASWDETVAAIASRWREIIAVHGAEAILPYSYAGTMGLVQRNA CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHCCCC GHPFFHRLGASRLERTICSPAKEAGWKAVMGDTPAPHPDEVAESDLVILWGINAAATNIH CCHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCCCCHHHCCCCEEEEEECCHHHHHHH FLHGVREARRRGAPVWVIDTYRTPTAAAADRVILPRPGSDGALALGMMHVLARDGLVDRA HHHHHHHHHHCCCCEEEEECCCCCCHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHH FLAERVQGYDELAERILPDYPPERVAALTGIPAAEIEELARRYGRARAPFIRLGSGLSRY HHHHHHCCHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHCCCHHHH GNGAMTVRCIAALPALTGAYAVRGGGCLASTSTGPAFALGEVLREDFMARPTRVVNMNRL CCCCCEEHHHHHHHHHHHHHEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEHHHH GHALTGLADPPVMSLYVYHSNPAAVTPDQNEVIRGLCRDDLFTVVHERFLTDTARYADIV HHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE LPATSSLEHADVYRAYGTYCIQRAHPAIPPVGESRSNWDTFALLAGAMGFEEEFFRRSAG ECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH EMIDRLLSVPTAMRAGIDQVRFDAGLAVELPLAPDAPRIFATPSGKVEILNPREPEPLPR HHHHHHHHCCHHHHHCHHHHEECCCCEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCC HIPCHEDAGELPLRLMTAPTPYALNASFYEQEELRQKQGGAMSLLLNPAEATARNLAEGQ CCCCCCCCCCCCEEEEECCCCCEECCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC RVTAVNDRGRVAFILRITDRVPPGVAVAEGVWWLEHAPGDRTVNALTSQRLTDRGNGSTF EEEEECCCCCEEEEEEEECCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEE YDTRIEVLPAP EECEEEEECCC >Mature Secondary Structure PELKRSVCPYDCPDTCGLLVEVENGRAVRVTGDPDHPFTRGTLCPKMLHYEKTVHSSRR CCHHCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCC LTTPLVRTGPKGSGSFRPASWDETVAAIASRWREIIAVHGAEAILPYSYAGTMGLVQRNA CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHCCCC GHPFFHRLGASRLERTICSPAKEAGWKAVMGDTPAPHPDEVAESDLVILWGINAAATNIH CCHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCCCCHHHCCCCEEEEEECCHHHHHHH FLHGVREARRRGAPVWVIDTYRTPTAAAADRVILPRPGSDGALALGMMHVLARDGLVDRA HHHHHHHHHHCCCCEEEEECCCCCCHHHCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHH FLAERVQGYDELAERILPDYPPERVAALTGIPAAEIEELARRYGRARAPFIRLGSGLSRY HHHHHHCCHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHCCCHHHH GNGAMTVRCIAALPALTGAYAVRGGGCLASTSTGPAFALGEVLREDFMARPTRVVNMNRL CCCCCEEHHHHHHHHHHHHHEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEHHHH GHALTGLADPPVMSLYVYHSNPAAVTPDQNEVIRGLCRDDLFTVVHERFLTDTARYADIV HHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE LPATSSLEHADVYRAYGTYCIQRAHPAIPPVGESRSNWDTFALLAGAMGFEEEFFRRSAG ECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHH EMIDRLLSVPTAMRAGIDQVRFDAGLAVELPLAPDAPRIFATPSGKVEILNPREPEPLPR HHHHHHHHCCHHHHHCHHHHEECCCCEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCC HIPCHEDAGELPLRLMTAPTPYALNASFYEQEELRQKQGGAMSLLLNPAEATARNLAEGQ CCCCCCCCCCCCEEEEECCCCCEECCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC RVTAVNDRGRVAFILRITDRVPPGVAVAEGVWWLEHAPGDRTVNALTSQRLTDRGNGSTF EEEEECCCCCEEEEEEEECCCCCCCCHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEE YDTRIEVLPAP EECEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: May Bind 4Fe-4S Cluster. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]