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The map label for this gene is rnk [H]

Identifier: 39995942

GI number: 39995942

Start: 895653

End: 896060

Strand: Reverse

Name: rnk [H]

Synonym: GSU0836

Alternate gene names: 39995942

Gene position: 896060-895653 (Counterclockwise)

Preceding gene: 39995943

Following gene: 39995941

Centisome position: 23.49

GC content: 54.17

Gene sequence:

>408_bases
ATGGACACACGAGCTATCTACGTAACAGAAGACGATCTCTCAAGACTTGAAGAGATTCTCGATACGATACCGTTTCGCGA
CCGTAAGGATCTCCAGAAACTGGAAGACGAACTGGCATCGGCCATGATCGTCGATCCCAAGGATGTTCCGCCGAATGTCG
TAACCATGAACTCGCGGGTTAAGCTGCGCGATCTCCGTGCCGACAAGGAAATGACCATATCGTTGGTCTTTCCCAACGAC
GCAAACATTGCGGAAGGAAAAATCTCCATCCTGTCACCCATCGGGACCGCGATTCTCGGCTTTGGCGCCGGCGACACCCT
GGACCTGGCAGTCCGTTCGTTTGCCAAAAAAATCAGAATCGAGGAGGTTCTCTATCAGCCCGGGGCGGCGGGGAGTCACG
CCCGGTAA

Upstream 100 bases:

>100_bases
TGACATGAACAGTACGTCCGCTAAAGGAATGTAGGGCTTTTTCACGCTCACATGGTCTGAATACAAGAACTTACACTTCA
TCATCATGAGGAGGAAACAT

Downstream 100 bases:

>100_bases
GGCATCGCCGGGAGATCAGGACTCATCGGACACACAACGGGAAGGAGATGAAGGACCATGAAATGCCCCATCTGTAACGA
TCGCACGACAATCGAAATCG

Product: nucleoside diphosphate kinase regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MDTRAIYVTEDDLSRLEEILDTIPFRDRKDLQKLEDELASAMIVDPKDVPPNVVTMNSRVKLRDLRADKEMTISLVFPND
ANIAEGKISILSPIGTAILGFGAGDTLDLAVRSFAKKIRIEEVLYQPGAAGSHAR

Sequences:

>Translated_135_residues
MDTRAIYVTEDDLSRLEEILDTIPFRDRKDLQKLEDELASAMIVDPKDVPPNVVTMNSRVKLRDLRADKEMTISLVFPND
ANIAEGKISILSPIGTAILGFGAGDTLDLAVRSFAKKIRIEEVLYQPGAAGSHAR
>Mature_135_residues
MDTRAIYVTEDDLSRLEEILDTIPFRDRKDLQKLEDELASAMIVDPKDVPPNVVTMNSRVKLRDLRADKEMTISLVFPND
ANIAEGKISILSPIGTAILGFGAGDTLDLAVRSFAKKIRIEEVLYQPGAAGSHAR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=135, Percent_Identity=31.8518518518519, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14910; Mature: 14910

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00830 GREAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTRAIYVTEDDLSRLEEILDTIPFRDRKDLQKLEDELASAMIVDPKDVPPNVVTMNSRV
CCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCCCCCEEEECCCE
KLRDLRADKEMTISLVFPNDANIAEGKISILSPIGTAILGFGAGDTLDLAVRSFAKKIRI
EEEECCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
EEVLYQPGAAGSHAR
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MDTRAIYVTEDDLSRLEEILDTIPFRDRKDLQKLEDELASAMIVDPKDVPPNVVTMNSRV
CCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCCCCCEEEECCCE
KLRDLRADKEMTISLVFPNDANIAEGKISILSPIGTAILGFGAGDTLDLAVRSFAKKIRI
EEEECCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
EEVLYQPGAAGSHAR
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]