| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is ntrY [H]
Identifier: 39995918
GI number: 39995918
Start: 870871
End: 873117
Strand: Reverse
Name: ntrY [H]
Synonym: GSU0812
Alternate gene names: 39995918
Gene position: 873117-870871 (Counterclockwise)
Preceding gene: 39995919
Following gene: 39995917
Centisome position: 22.89
GC content: 63.2
Gene sequence:
>2247_bases ATGGACAAACGGACCACGGACAGCACGCCTACAGCAACACCAGCCGAACGGGAACGGATCAAGCGGCGCCGCGAAGGGAT CGTCATCGCCCTGTCGGTGCTCCTGATCCTGATCCTGACCCGGGTGGAGATCCACCTGTCGCGCATCAGCTCCGATGTGC CGATGGGGAGCAACTTCCTGATCTTCGGCGTCATCAACGTCATCATCCTGCTGATCATCCTCCTCATCTACCTTCTGTTC CGCAACGTGGCAAAGCTTCTGATGGAGCGACGGGGCAAGGCCCTGGGGGCCAACCTGCGCACGAAACTCGTCATCGCCTT CGTGAGCCTCTCCATCATCCCCACCATGCTCCTGTTCTTTGTCTCGGCCACCTACGTGAACCAGAGCATCCGCAACTGGT TCAACACCCAGATCGAAAACTCCCTCTCCGAATCGCTGGAGGTTGCCCAGACCTACTACAAGAATTCGGCGGCCAACGCT CTCTACTACGGTAACCAGATCAGCGCCATCATCCGGGACCAGCGCCTGCTCAACGACGAGAACCTGCCGCGGATGAAGGA GCTGATCCGCCAGAAGCAGAAGGAGTACAACCTGGGAATCGTGGAGGTCTACTCGGCCCAGAATGAGGAGCTGGTCCGCG CCGCGAACCCGGGGCTCCCGCTGGGGGAGTTCACCAACCCTTCCTCCGAAGACATCAAGCAGGGGCTCAACGGCAAGGAA CTGACCCGGGTCAACACGGTGGGTAAGGCCGACCTCATCCGCGGCATCGTGCCGATCTATTCCACCTACCGCGCCGACGA GGTGGTGGGGGCGGTGGTGGTCAACTACTTCGTCCCCTACTCCCTGGTGGAGAAAATGCGGGAGATCACCGCCTCCTACG AGCAGTTCCGTCAGCTCAAAATCCTGAAGAATCCCATCCGGTCCGGCTACATCCTGGCCCTGTTCCTGATCACCATGGTG ATTATCTTCCTGGCGGTCTGGTTCGGACTCCACCTGGCCAACAGCCTCACCACGCCGATCCAGGAACTGGCCGAAGCGAC CCGTCAGGTGGCCGAGGGAAACCTGAACATCCGCCTGGGCCAGCGGACCGACGATGAGCTGGGCATGCTGGTGGCCGCCT TCAACAAGATGACCGACGACCTGCGAAGCAACCAGCTGGCCCTGAAAAACGCCAACGACGAGTTGTCGCGCAGCAACCAG GAACTGGAACAGCGGCGGCGCCATATGGAAATTGTGCTCCGCAACGTGGCTGCCGGGGTCATCGCCGTGGACCGGGGGGG GACGATAACCACCATCAACCCCTCAGCGGCCCGGCTCCTGCAGATCGACATGCCCCGGGCCGTGGGCCACAACTTCCGGG AGGTGCTCAAGGGAGAGCAGCTCGACATCGTGAAGGGGGTCCTGCGGGACATGGTCATGGCCAAGAAGGACAGCATCAGC CGCCAGATCACGGTGCCGGTGCGGGACAGCCGGGCGACGTTCCTCTTCAACCTGTCGGTCCTGCGGGACGAGAGCGGCGA ATTCCTCGGCACCGTGGTGGTCTTCGACGACATGACCCAGTTGATCAAGGCCCAGCGGATGGCCGCCTGGCGCGAGGTGG CCCGCCGCATCGCCCACGAGATCAAGAATCCGCTGACCCCGATCCAGCTCTCGGCCCAACGGCTGCGCAAGCGCTACCTT CCCCGCTTCGGCGACGAAGACCGGGTCTTTGACGAGTGCACGGCCATGATCGTCAAATCCGTTGACGAACTGAAGACCCT GGTGGACGAGTTCTCCAACTTCGCCCGGATGCCTGCGGCCCATCCCTCCCCCAACGACCTGAACGCCGTCATCCGCGAGG CAGTCACCCTCTTCCGGGAAGGGCACCGCGGCGTCGCGTTCGGCTTCAGCGCCGACGACCGGCTGCCCCTGCTGCAGCTG GACCGGGACCAGATCAAGCGGGTCTTCATCAACCTCCTGGACAACGCCGTGGCGGCCATGGGGGGGACGGGCGAGGTCCG GATCATGAGCCGCTTCGATCCGGAGCTGAAAATGGCGGTGGTGACCGTGGCCGATACGGGGCCGGGCATCCCCCCGGAGG ACAAGACGCGGGTCTTCGAGCCCTACTTCTCCACCAAGGCGTCGGGCACCGGCCTGGGGCTCGCCATCGTCAGCAGCATC ATCACCGACCATCACGGGTTCATCCGGGTGCGGGACAACGAGCCCCGGGGGACCAAGTTCGTCATCGAACTGCCCGTGAC GGGATAG
Upstream 100 bases:
>100_bases CATCCGGGGCGTATTTCTCCCGCCACATCGACTCCTTGCATAATCCGCTGCGTTCCGCTAGAGTGTGACTGTTGCATTTA CGCCACACCTCGGACGCCCC
Downstream 100 bases:
>100_bases AGAGGATTACGTGAACGAAACGATACTCGTCGTGGACGACGAACAGGACATCCGCACGGCCCTGGCCGGCATTCTGGAGG ACGAGGGGTACCGGACCGCC
Product: nitrogen regulation protein NtrY
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 748; Mature: 748
Protein sequence:
>748_residues MDKRTTDSTPTATPAERERIKRRREGIVIALSVLLILILTRVEIHLSRISSDVPMGSNFLIFGVINVIILLIILLIYLLF RNVAKLLMERRGKALGANLRTKLVIAFVSLSIIPTMLLFFVSATYVNQSIRNWFNTQIENSLSESLEVAQTYYKNSAANA LYYGNQISAIIRDQRLLNDENLPRMKELIRQKQKEYNLGIVEVYSAQNEELVRAANPGLPLGEFTNPSSEDIKQGLNGKE LTRVNTVGKADLIRGIVPIYSTYRADEVVGAVVVNYFVPYSLVEKMREITASYEQFRQLKILKNPIRSGYILALFLITMV IIFLAVWFGLHLANSLTTPIQELAEATRQVAEGNLNIRLGQRTDDELGMLVAAFNKMTDDLRSNQLALKNANDELSRSNQ ELEQRRRHMEIVLRNVAAGVIAVDRGGTITTINPSAARLLQIDMPRAVGHNFREVLKGEQLDIVKGVLRDMVMAKKDSIS RQITVPVRDSRATFLFNLSVLRDESGEFLGTVVVFDDMTQLIKAQRMAAWREVARRIAHEIKNPLTPIQLSAQRLRKRYL PRFGDEDRVFDECTAMIVKSVDELKTLVDEFSNFARMPAAHPSPNDLNAVIREAVTLFREGHRGVAFGFSADDRLPLLQL DRDQIKRVFINLLDNAVAAMGGTGEVRIMSRFDPELKMAVVTVADTGPGIPPEDKTRVFEPYFSTKASGTGLGLAIVSSI ITDHHGFIRVRDNEPRGTKFVIELPVTG
Sequences:
>Translated_748_residues MDKRTTDSTPTATPAERERIKRRREGIVIALSVLLILILTRVEIHLSRISSDVPMGSNFLIFGVINVIILLIILLIYLLF RNVAKLLMERRGKALGANLRTKLVIAFVSLSIIPTMLLFFVSATYVNQSIRNWFNTQIENSLSESLEVAQTYYKNSAANA LYYGNQISAIIRDQRLLNDENLPRMKELIRQKQKEYNLGIVEVYSAQNEELVRAANPGLPLGEFTNPSSEDIKQGLNGKE LTRVNTVGKADLIRGIVPIYSTYRADEVVGAVVVNYFVPYSLVEKMREITASYEQFRQLKILKNPIRSGYILALFLITMV IIFLAVWFGLHLANSLTTPIQELAEATRQVAEGNLNIRLGQRTDDELGMLVAAFNKMTDDLRSNQLALKNANDELSRSNQ ELEQRRRHMEIVLRNVAAGVIAVDRGGTITTINPSAARLLQIDMPRAVGHNFREVLKGEQLDIVKGVLRDMVMAKKDSIS RQITVPVRDSRATFLFNLSVLRDESGEFLGTVVVFDDMTQLIKAQRMAAWREVARRIAHEIKNPLTPIQLSAQRLRKRYL PRFGDEDRVFDECTAMIVKSVDELKTLVDEFSNFARMPAAHPSPNDLNAVIREAVTLFREGHRGVAFGFSADDRLPLLQL DRDQIKRVFINLLDNAVAAMGGTGEVRIMSRFDPELKMAVVTVADTGPGIPPEDKTRVFEPYFSTKASGTGLGLAIVSSI ITDHHGFIRVRDNEPRGTKFVIELPVTG >Mature_748_residues MDKRTTDSTPTATPAERERIKRRREGIVIALSVLLILILTRVEIHLSRISSDVPMGSNFLIFGVINVIILLIILLIYLLF RNVAKLLMERRGKALGANLRTKLVIAFVSLSIIPTMLLFFVSATYVNQSIRNWFNTQIENSLSESLEVAQTYYKNSAANA LYYGNQISAIIRDQRLLNDENLPRMKELIRQKQKEYNLGIVEVYSAQNEELVRAANPGLPLGEFTNPSSEDIKQGLNGKE LTRVNTVGKADLIRGIVPIYSTYRADEVVGAVVVNYFVPYSLVEKMREITASYEQFRQLKILKNPIRSGYILALFLITMV IIFLAVWFGLHLANSLTTPIQELAEATRQVAEGNLNIRLGQRTDDELGMLVAAFNKMTDDLRSNQLALKNANDELSRSNQ ELEQRRRHMEIVLRNVAAGVIAVDRGGTITTINPSAARLLQIDMPRAVGHNFREVLKGEQLDIVKGVLRDMVMAKKDSIS RQITVPVRDSRATFLFNLSVLRDESGEFLGTVVVFDDMTQLIKAQRMAAWREVARRIAHEIKNPLTPIQLSAQRLRKRYL PRFGDEDRVFDECTAMIVKSVDELKTLVDEFSNFARMPAAHPSPNDLNAVIREAVTLFREGHRGVAFGFSADDRLPLLQL DRDQIKRVFINLLDNAVAAMGGTGEVRIMSRFDPELKMAVVTVADTGPGIPPEDKTRVFEPYFSTKASGTGLGLAIVSSI ITDHHGFIRVRDNEPRGTKFVIELPVTG
Specific function: Member of the two-component regulatory system ntrY/ntrX involved in nitrogen level control. Probably activates ntrX by phosphorylation [H]
COG id: COG5000
COG function: function code T; Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=356, Percent_Identity=29.7752808988764, Blast_Score=169, Evalue=5e-43, Organism=Escherichia coli, GI1790436, Length=230, Percent_Identity=32.1739130434783, Blast_Score=119, Evalue=5e-28, Organism=Escherichia coli, GI1790300, Length=350, Percent_Identity=30.5714285714286, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI1789808, Length=220, Percent_Identity=31.3636363636364, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1788393, Length=243, Percent_Identity=27.1604938271605, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1790346, Length=258, Percent_Identity=25.968992248062, Blast_Score=74, Evalue=4e-14, Organism=Escherichia coli, GI1787894, Length=258, Percent_Identity=27.1317829457364, Blast_Score=71, Evalue=3e-13, Organism=Escherichia coli, GI1786600, Length=367, Percent_Identity=24.5231607629428, Blast_Score=70, Evalue=7e-13, Organism=Escherichia coli, GI145693157, Length=231, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1786912, Length=122, Percent_Identity=33.6065573770492, Blast_Score=64, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR000014 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR017232 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 84017; Mature: 84017
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKRTTDSTPTATPAERERIKRRREGIVIALSVLLILILTRVEIHLSRISSDVPMGSNFL CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH IFGVINVIILLIILLIYLLFRNVAKLLMERRGKALGANLRTKLVIAFVSLSIIPTMLLFF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VSATYVNQSIRNWFNTQIENSLSESLEVAQTYYKNSAANALYYGNQISAIIRDQRLLNDE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCC NLPRMKELIRQKQKEYNLGIVEVYSAQNEELVRAANPGLPLGEFTNPSSEDIKQGLNGKE CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCH LTRVNTVGKADLIRGIVPIYSTYRADEVVGAVVVNYFVPYSLVEKMREITASYEQFRQLK HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ILKNPIRSGYILALFLITMVIIFLAVWFGLHLANSLTTPIQELAEATRQVAEGNLNIRLG HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC QRTDDELGMLVAAFNKMTDDLRSNQLALKNANDELSRSNQELEQRRRHMEIVLRNVAAGV CCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCE IAVDRGGTITTINPSAARLLQIDMPRAVGHNFREVLKGEQLDIVKGVLRDMVMAKKDSIS EEEECCCEEEEECCCHHHHEEECCCHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCC RQITVPVRDSRATFLFNLSVLRDESGEFLGTVVVFDDMTQLIKAQRMAAWREVARRIAHE CEEEEEEECCCEEEEEEEHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH IKNPLTPIQLSAQRLRKRYLPRFGDEDRVFDECTAMIVKSVDELKTLVDEFSNFARMPAA HHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC HPSPNDLNAVIREAVTLFREGHRGVAFGFSADDRLPLLQLDRDQIKRVFINLLDNAVAAM CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHC GGTGEVRIMSRFDPELKMAVVTVADTGPGIPPEDKTRVFEPYFSTKASGTGLGLAIVSSI CCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEECCHHCCCCCCCCHHHHHHHHH ITDHHGFIRVRDNEPRGTKFVIELPVTG HHCCCCEEEEECCCCCCCEEEEEECCCC >Mature Secondary Structure MDKRTTDSTPTATPAERERIKRRREGIVIALSVLLILILTRVEIHLSRISSDVPMGSNFL CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH IFGVINVIILLIILLIYLLFRNVAKLLMERRGKALGANLRTKLVIAFVSLSIIPTMLLFF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH VSATYVNQSIRNWFNTQIENSLSESLEVAQTYYKNSAANALYYGNQISAIIRDQRLLNDE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCC NLPRMKELIRQKQKEYNLGIVEVYSAQNEELVRAANPGLPLGEFTNPSSEDIKQGLNGKE CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCH LTRVNTVGKADLIRGIVPIYSTYRADEVVGAVVVNYFVPYSLVEKMREITASYEQFRQLK HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH ILKNPIRSGYILALFLITMVIIFLAVWFGLHLANSLTTPIQELAEATRQVAEGNLNIRLG HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC QRTDDELGMLVAAFNKMTDDLRSNQLALKNANDELSRSNQELEQRRRHMEIVLRNVAAGV CCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCE IAVDRGGTITTINPSAARLLQIDMPRAVGHNFREVLKGEQLDIVKGVLRDMVMAKKDSIS EEEECCCEEEEECCCHHHHEEECCCHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCC RQITVPVRDSRATFLFNLSVLRDESGEFLGTVVVFDDMTQLIKAQRMAAWREVARRIAHE CEEEEEEECCCEEEEEEEHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH IKNPLTPIQLSAQRLRKRYLPRFGDEDRVFDECTAMIVKSVDELKTLVDEFSNFARMPAA HHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC HPSPNDLNAVIREAVTLFREGHRGVAFGFSADDRLPLLQLDRDQIKRVFINLLDNAVAAM CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHC GGTGEVRIMSRFDPELKMAVVTVADTGPGIPPEDKTRVFEPYFSTKASGTGLGLAIVSSI CCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEECCHHCCCCCCCCHHHHHHHHH ITDHHGFIRVRDNEPRGTKFVIELPVTG HHCCCCEEEEECCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]