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The map label for this gene is hybB [C]

Identifier: 39995885

GI number: 39995885

Start: 838806

End: 840011

Strand: Direct

Name: hybB [C]

Synonym: GSU0779

Alternate gene names: 39995885

Gene position: 838806-840011 (Clockwise)

Preceding gene: 39995884

Following gene: 39995886

Centisome position: 21.99

GC content: 62.52

Gene sequence:

>1206_bases
ATGACCGCAGCACGTATCGTCATCAATGAAATCAAGGGATACCACCGGTTCATCAAGTTTCTGATGGTCCTGGTGGGTGC
GGCGGCCGTGGCCTCCGCGGTCCGCTTCATCTTCGGCCTGGGCGCCACCACCAACCTGAACGACCTCTACCCGTGGGGCC
TCTGGATCTCCTTCGACGTGGTCACTGCCGTGCCCCTGGCGGCCGGCGCCTTCACCATCGGCATCGTGGCCCACGTCTTC
CACATCAAGAAGCTGGAGCCCCTGGTCCGGCCGGCCATCGTCACCGGGTTCCTGGGCTATTCGCTGGTCTGTGTCGGGCT
GCTGCTCGACCTGGGCCAGCCCCAGCGGGGACCGTACGTCCTTTTCAACTGGAACGTCCACTCCCCCATGTTCGAGGTCT
CCATGTGCGTCATGGCGTACACCACGGTCCTCTTCCTGGAGTTCCTCCACCCGGTGAGCGAGCGGTTCGGCTGGCACATC
CCGCTGCGTCTGCTGCGGACCCTGGAGCTGCCGTTCGCCATCCTGGCGGCCATGATCTCCACGCTCCACCAGTCGACCCT
GGGGACCTTCTTCCTCATCGCCGTCGACAAGCTTCACAACCTCTGGTACAATCCGCTGCTGCCGCTGCAGTTCTGGCTCT
CCGCCATCTTCACCGGCCTCTCCATCGTCATCTTCGAGGCGAGCCTGGTCCATAAGTATATGGGGCAGCCGGACGAGTCG
GACCTGCTGGCCACGCTGACCAAGATCATCCCCTGGATCATGGGGGTCTACATAGCGGTCAAGGCTTACGCCCTGGCGTT
CCTCTCCCACGGCCCGCTCTTCGACCGGCCGGTCCTGACGGCCCTCTTCAGCGTTGAGGTAATCGTGGGTCTGCTGATCC
CCTTCGCCATGTTCCTCACCAAGCGGATCAGGACCGACAAGCAGATGCAGCTCCGGGCCGCTTCCCTGGTGATCGTGGGT
CTCATCCTGAACCGGTTCAACGTCTCCATGTTCGCCATGCACCAGCCCGGTCAGCCCGTGTATTTCCCGAACTTCATCGA
GTCGGTGGTGACCATCGGCATCATCGCGGCCCACATCCTCTTCTTCGTGCTCATTGCCAAGTATTTCCCGATCTTCGAGC
ACCATCCGGAGGCCACCGACTACACCATACCCGACCGCTTCCGCAAGATCGAGAAGCACGGCCACGGGACGGCGAGCGAA
GCGTAG

Upstream 100 bases:

>100_bases
CCGTGGGCGGCACCCTCTCCCTCATTACCTGGTTCCAGCACCGCAAGGACCGGGTCCGGAAGGAAGAAGAGGAGCAGAAG
AACCGCAAGGAGGGGAACCA

Downstream 100 bases:

>100_bases
TTCACGTAATCCAACGGCGCAGGGGCAATTCATGGATTGCCCCTGCAACCACGAGACCCCATGAAAACCATCCACATCTA
CACTAACGGCCGACTCGAAG

Product: formate dehydrogenase, b-type cytochrome subunit

Products: NA

Alternate protein names: HMC operon ORF 3 [H]

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MTAARIVINEIKGYHRFIKFLMVLVGAAAVASAVRFIFGLGATTNLNDLYPWGLWISFDVVTAVPLAAGAFTIGIVAHVF
HIKKLEPLVRPAIVTGFLGYSLVCVGLLLDLGQPQRGPYVLFNWNVHSPMFEVSMCVMAYTTVLFLEFLHPVSERFGWHI
PLRLLRTLELPFAILAAMISTLHQSTLGTFFLIAVDKLHNLWYNPLLPLQFWLSAIFTGLSIVIFEASLVHKYMGQPDES
DLLATLTKIIPWIMGVYIAVKAYALAFLSHGPLFDRPVLTALFSVEVIVGLLIPFAMFLTKRIRTDKQMQLRAASLVIVG
LILNRFNVSMFAMHQPGQPVYFPNFIESVVTIGIIAAHILFFVLIAKYFPIFEHHPEATDYTIPDRFRKIEKHGHGTASE
A

Sequences:

>Translated_401_residues
MTAARIVINEIKGYHRFIKFLMVLVGAAAVASAVRFIFGLGATTNLNDLYPWGLWISFDVVTAVPLAAGAFTIGIVAHVF
HIKKLEPLVRPAIVTGFLGYSLVCVGLLLDLGQPQRGPYVLFNWNVHSPMFEVSMCVMAYTTVLFLEFLHPVSERFGWHI
PLRLLRTLELPFAILAAMISTLHQSTLGTFFLIAVDKLHNLWYNPLLPLQFWLSAIFTGLSIVIFEASLVHKYMGQPDES
DLLATLTKIIPWIMGVYIAVKAYALAFLSHGPLFDRPVLTALFSVEVIVGLLIPFAMFLTKRIRTDKQMQLRAASLVIVG
LILNRFNVSMFAMHQPGQPVYFPNFIESVVTIGIIAAHILFFVLIAKYFPIFEHHPEATDYTIPDRFRKIEKHGHGTASE
A
>Mature_400_residues
TAARIVINEIKGYHRFIKFLMVLVGAAAVASAVRFIFGLGATTNLNDLYPWGLWISFDVVTAVPLAAGAFTIGIVAHVFH
IKKLEPLVRPAIVTGFLGYSLVCVGLLLDLGQPQRGPYVLFNWNVHSPMFEVSMCVMAYTTVLFLEFLHPVSERFGWHIP
LRLLRTLELPFAILAAMISTLHQSTLGTFFLIAVDKLHNLWYNPLLPLQFWLSAIFTGLSIVIFEASLVHKYMGQPDESD
LLATLTKIIPWIMGVYIAVKAYALAFLSHGPLFDRPVLTALFSVEVIVGLLIPFAMFLTKRIRTDKQMQLRAASLVIVGL
ILNRFNVSMFAMHQPGQPVYFPNFIESVVTIGIIAAHILFFVLIAKYFPIFEHHPEATDYTIPDRFRKIEKHGHGTASEA

Specific function: HMWC (high-molecular-weight cytochrome c), ORF2, ORF3, ORF4, ORF5 and ORF6 in the HMC operon form a transmembrane protein complex that allows electron flow from the periplasmic hydrogenase to the cytoplasmic enzymes that catalyze reduction of sulfates [H]

COG id: COG5557

COG function: function code C; Polysulphide reductase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nrfD family [H]

Homologues:

Organism=Escherichia coli, GI2367183, Length=343, Percent_Identity=32.3615160349854, Blast_Score=186, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005614 [H]

Pfam domain/function: PF03916 NrfD [H]

EC number: NA

Molecular weight: Translated: 44925; Mature: 44794

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TAARIVINEIKGYHRFIKFLMVLVGAAAVASAVRFIFGLGATTNLNDLYPWGLWISFDV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
VTAVPLAAGAFTIGIVAHVFHIKKLEPLVRPAIVTGFLGYSLVCVGLLLDLGQPQRGPYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LFNWNVHSPMFEVSMCVMAYTTVLFLEFLHPVSERFGWHIPLRLLRTLELPFAILAAMIS
EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHH
TLHQSTLGTFFLIAVDKLHNLWYNPLLPLQFWLSAIFTGLSIVIFEASLVHKYMGQPDES
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
DLLATLTKIIPWIMGVYIAVKAYALAFLSHGPLFDRPVLTALFSVEVIVGLLIPFAMFLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KRIRTDKQMQLRAASLVIVGLILNRFNVSMFAMHQPGQPVYFPNFIESVVTIGIIAAHIL
HHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
FFVLIAKYFPIFEHHPEATDYTIPDRFRKIEKHGHGTASEA
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8335628 [H]