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The map label for this gene is rnk [H]

Identifier: 39995838

GI number: 39995838

Start: 778861

End: 779289

Strand: Reverse

Name: rnk [H]

Synonym: GSU0732

Alternate gene names: 39995838

Gene position: 779289-778861 (Counterclockwise)

Preceding gene: 39995840

Following gene: 39995836

Centisome position: 20.43

GC content: 60.14

Gene sequence:

>429_bases
ATGAAAAAGAAAGCTGAAGAACGATCGATCTACATCACCGAATTCGATCTGACGCGGCTCGAAGAGCTGCTGGACAAGAT
TGACACGGAGGGTTCCCGGGACAGCCGGCACCTGCAGGAGCTGGAGGATGAGCTGCTGCGCGCCGAGGTGGTTGAGCCGC
AGCAGATTCCGGCCGACGTGGTCACCATGAATTCGCGGGTTGCCCTGAAAGACCTGGCCACGGGAGAGGAGATGGTGTAC
GAGCTCGTCTTCCCCTCCGACGCGCGGCTTGAGGAAAACCGGATATCCATCCTGGCCCCCGTCGGCACAGCCCTGCTCGG
CTACCGGGCCGGTGACACCATCACCTGGAAGGTTCCCGGGGGCACGAGAAAGATCAAAATCACCAAGATTCTCTACCAGC
CGGAAGCGGCGGGGGATTTTCATCGGTAG

Upstream 100 bases:

>100_bases
TGGTTAAGTCGCGACCGTTGAATACTTGCCGACGTTGTGTATCATTGAAGCTTTATCCGGAGGGGGACCGAACGTGCCCC
TCCTCAACGGGAGCGACGTC

Downstream 100 bases:

>100_bases
CCGGCACGCGCCTGGTTCCCGGTACGAAAAAAGCCCGCATTCGGCGGGCTTTTTCATTTTCCGGGCCGCGCAAACCGGCG
CCGTCAGTAGATGGCGTAAT

Product: nucleoside diphosphate kinase regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKKKAEERSIYITEFDLTRLEELLDKIDTEGSRDSRHLQELEDELLRAEVVEPQQIPADVVTMNSRVALKDLATGEEMVY
ELVFPSDARLEENRISILAPVGTALLGYRAGDTITWKVPGGTRKIKITKILYQPEAAGDFHR

Sequences:

>Translated_142_residues
MKKKAEERSIYITEFDLTRLEELLDKIDTEGSRDSRHLQELEDELLRAEVVEPQQIPADVVTMNSRVALKDLATGEEMVY
ELVFPSDARLEENRISILAPVGTALLGYRAGDTITWKVPGGTRKIKITKILYQPEAAGDFHR
>Mature_142_residues
MKKKAEERSIYITEFDLTRLEELLDKIDTEGSRDSRHLQELEDELLRAEVVEPQQIPADVVTMNSRVALKDLATGEEMVY
ELVFPSDARLEENRISILAPVGTALLGYRAGDTITWKVPGGTRKIKITKILYQPEAAGDFHR

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=133, Percent_Identity=41.3533834586466, Blast_Score=104, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 16114; Mature: 16114

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKAEERSIYITEFDLTRLEELLDKIDTEGSRDSRHLQELEDELLRAEVVEPQQIPADV
CCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHE
VTMNSRVALKDLATGEEMVYELVFPSDARLEENRISILAPVGTALLGYRAGDTITWKVPG
EECCCCEEEHHHCCCHHHEEEEECCCCCCCCCCCEEEEECHHHHHHHCCCCCEEEEEECC
GTRKIKITKILYQPEAAGDFHR
CCEEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKKKAEERSIYITEFDLTRLEELLDKIDTEGSRDSRHLQELEDELLRAEVVEPQQIPADV
CCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHE
VTMNSRVALKDLATGEEMVYELVFPSDARLEENRISILAPVGTALLGYRAGDTITWKVPG
EECCCCEEEHHHCCCHHHEEEEECCCCCCCCCCCEEEEECHHHHHHHCCCCCEEEEEECC
GTRKIKITKILYQPEAAGDFHR
CCEEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]