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The map label for this gene is 39995659

Identifier: 39995659

GI number: 39995659

Start: 584623

End: 586161

Strand: Direct

Name: 39995659

Synonym: GSU0552

Alternate gene names: NA

Gene position: 584623-586161 (Clockwise)

Preceding gene: 39995658

Following gene: 39995660

Centisome position: 15.33

GC content: 49.77

Gene sequence:

>1539_bases
GTGCCATCACTCGATGATTTCTTGCGTAGGGGATATTTCCCCAAAGAGTTGCTACCACCGTTCACAACGAGTTCGTACGC
AGATGCGTTGAACGGCCTTGGAACTGTGCCCGATTCTAACTTCAAACAAACCAAATGTATCAGATTTTCCCACTCGAAAT
ACGCATCTCTTCGTCGTGATCTATCAATTCCGAACCCATACCCATTCTACGAGTTGGCCGCCCTGTTATCAGCGCACTGG
GGGGAGGTCGAGACACAATGGAATAACTCTCCCTACACACGTAGTGCCCCTGTTCCATCCATGACCAGGGCGGTAGAAGG
AAATACAAATTTCAATGCCCTTCCTAATGCCCGTGCCGAGGTTCGTTCTTCGGGGCGCTTCCTCCTCAACGCGGACGTAT
CGAAGTGCTACCACACTATATACACTCACAGCCTACCATGGGCGTTACACACTAAGCCCGTAGCAAAGAACAACCAAAAA
TGGCCTCCCGCTGGAGGAAAACCTCCTTTGGTCGGCAACGGACTTGACCTATGGTCAAGGAACCTGCAAGACGCACAAAC
TATTGGCCTCCCAGTCGGACCGGACACCTCCTTTGTACTTGCCGAAGCACTTCTGTCTGCAGTAGATCAACTAGTTGCGT
CAAAAATCGCCGGTGCGCGCGGCTTTAGGTTTGTTGATGACTACGAGTTCGTATGTGACACACTTGAACAAGCTGAACAG
GTTCTATCCGTTCTTCAATGGGCACTCGCAGAGTTCGAGTTGAGTCTCAACCCCAAGAAAACAACTATCAAGGAACTTCC
AACGGCACTGGATACCACATGGGTAAACGCCTTCTGTGAATTAGAGTTCGCCGCCGAGTCTCCGAAATTACAACGGCAAC
TTACTCGGTACTTTACGGATGCCTTCGAATTGACATGCAAGTTCCCAGGTGATCCAGTCCTTAAGTACGCTGCAGCTCGA
TTGCCGGACAATCCACCCGATGATGCGGCGGCAAACTTAATCCAGCGTCTGTCCCTACAGGCGGCTTGCGTAGATTCAGG
CACACTTCAACATACATTACGTTCCTTTTGGGATCACCGGTCCGCTGGTCGAGATCTCGATCTAGTCGCCTTGAAAAGAG
CTTTAGATTTTATTGTCCAGAGACATGCCCTTCTAGGTCATAGCAGTGAGGTCGCATGGTGTATATGGGCAGCCGACGTA
TTTACTGTCCAGCTTTCCACATCTTCTGCCAACTGCATCGGAAATATGGTTGATGACGTAGTTGCACTGACCGCATTGGA
TGGAATCCAAAAAGGGGCATTTGAAACTCCGCCAAATACAAACAATTGGGAATACATCATCAACAACACAAGCCTGAAAG
AAGAACACTGGCTACTATTATTCGAGGCCATTGGGCAAGGTTGGCTTCCCCCACCAGTTGGAGGGGATCCAGCACTCGCA
GACCCCTTTTTCAATCACCTTCGTACTCAAGATGTCAGATTCTATGATACTGCTGCAACCCTTGATATCCCTGAACCACC
GGGTCCGGACACCTATTGA

Upstream 100 bases:

>100_bases
TGGGTGGATCACCGGTTCACGCGCGTGCGCGCGTGAACCGGTCAATGCTGAGTTGGTCGAATATATGAGGGAATGCAATA
TTTATTAAGGAGGTAGCAGA

Downstream 100 bases:

>100_bases
AAAGCCAAACCTCTAGTACTAGAAAAGGCAAGAAAAGGGGCTACTTTTCTCCCTGAATCCGTAAATAAACTGAGAGGTGT
TTTTGTTACCTTCTACTATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MPSLDDFLRRGYFPKELLPPFTTSSYADALNGLGTVPDSNFKQTKCIRFSHSKYASLRRDLSIPNPYPFYELAALLSAHW
GEVETQWNNSPYTRSAPVPSMTRAVEGNTNFNALPNARAEVRSSGRFLLNADVSKCYHTIYTHSLPWALHTKPVAKNNQK
WPPAGGKPPLVGNGLDLWSRNLQDAQTIGLPVGPDTSFVLAEALLSAVDQLVASKIAGARGFRFVDDYEFVCDTLEQAEQ
VLSVLQWALAEFELSLNPKKTTIKELPTALDTTWVNAFCELEFAAESPKLQRQLTRYFTDAFELTCKFPGDPVLKYAAAR
LPDNPPDDAAANLIQRLSLQAACVDSGTLQHTLRSFWDHRSAGRDLDLVALKRALDFIVQRHALLGHSSEVAWCIWAADV
FTVQLSTSSANCIGNMVDDVVALTALDGIQKGAFETPPNTNNWEYIINNTSLKEEHWLLLFEAIGQGWLPPPVGGDPALA
DPFFNHLRTQDVRFYDTAATLDIPEPPGPDTY

Sequences:

>Translated_512_residues
MPSLDDFLRRGYFPKELLPPFTTSSYADALNGLGTVPDSNFKQTKCIRFSHSKYASLRRDLSIPNPYPFYELAALLSAHW
GEVETQWNNSPYTRSAPVPSMTRAVEGNTNFNALPNARAEVRSSGRFLLNADVSKCYHTIYTHSLPWALHTKPVAKNNQK
WPPAGGKPPLVGNGLDLWSRNLQDAQTIGLPVGPDTSFVLAEALLSAVDQLVASKIAGARGFRFVDDYEFVCDTLEQAEQ
VLSVLQWALAEFELSLNPKKTTIKELPTALDTTWVNAFCELEFAAESPKLQRQLTRYFTDAFELTCKFPGDPVLKYAAAR
LPDNPPDDAAANLIQRLSLQAACVDSGTLQHTLRSFWDHRSAGRDLDLVALKRALDFIVQRHALLGHSSEVAWCIWAADV
FTVQLSTSSANCIGNMVDDVVALTALDGIQKGAFETPPNTNNWEYIINNTSLKEEHWLLLFEAIGQGWLPPPVGGDPALA
DPFFNHLRTQDVRFYDTAATLDIPEPPGPDTY
>Mature_511_residues
PSLDDFLRRGYFPKELLPPFTTSSYADALNGLGTVPDSNFKQTKCIRFSHSKYASLRRDLSIPNPYPFYELAALLSAHWG
EVETQWNNSPYTRSAPVPSMTRAVEGNTNFNALPNARAEVRSSGRFLLNADVSKCYHTIYTHSLPWALHTKPVAKNNQKW
PPAGGKPPLVGNGLDLWSRNLQDAQTIGLPVGPDTSFVLAEALLSAVDQLVASKIAGARGFRFVDDYEFVCDTLEQAEQV
LSVLQWALAEFELSLNPKKTTIKELPTALDTTWVNAFCELEFAAESPKLQRQLTRYFTDAFELTCKFPGDPVLKYAAARL
PDNPPDDAAANLIQRLSLQAACVDSGTLQHTLRSFWDHRSAGRDLDLVALKRALDFIVQRHALLGHSSEVAWCIWAADVF
TVQLSTSSANCIGNMVDDVVALTALDGIQKGAFETPPNTNNWEYIINNTSLKEEHWLLLFEAIGQGWLPPPVGGDPALAD
PFFNHLRTQDVRFYDTAATLDIPEPPGPDTY

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56769; Mature: 56638

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLDDFLRRGYFPKELLPPFTTSSYADALNGLGTVPDSNFKQTKCIRFSHSKYASLRRD
CCCHHHHHHCCCCCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHC
LSIPNPYPFYELAALLSAHWGEVETQWNNSPYTRSAPVPSMTRAVEGNTNFNALPNARAE
CCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHH
VRSSGRFLLNADVSKCYHTIYTHSLPWALHTKPVAKNNQKWPPAGGKPPLVGNGLDLWSR
HHCCCCEEEECCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
NLQDAQTIGLPVGPDTSFVLAEALLSAVDQLVASKIAGARGFRFVDDYEFVCDTLEQAEQ
CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
VLSVLQWALAEFELSLNPKKTTIKELPTALDTTWVNAFCELEFAAESPKLQRQLTRYFTD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHH
AFELTCKFPGDPVLKYAAARLPDNPPDDAAANLIQRLSLQAACVDSGTLQHTLRSFWDHR
HHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SAGRDLDLVALKRALDFIVQRHALLGHSSEVAWCIWAADVFTVQLSTSSANCIGNMVDDV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCHHHHHHHHHH
VALTALDGIQKGAFETPPNTNNWEYIINNTSLKEEHWLLLFEAIGQGWLPPPVGGDPALA
HHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHH
DPFFNHLRTQDVRFYDTAATLDIPEPPGPDTY
HHHHHHHCCCCCEEEECEEEEECCCCCCCCCC
>Mature Secondary Structure 
PSLDDFLRRGYFPKELLPPFTTSSYADALNGLGTVPDSNFKQTKCIRFSHSKYASLRRD
CCHHHHHHCCCCCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHC
LSIPNPYPFYELAALLSAHWGEVETQWNNSPYTRSAPVPSMTRAVEGNTNFNALPNARAE
CCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHH
VRSSGRFLLNADVSKCYHTIYTHSLPWALHTKPVAKNNQKWPPAGGKPPLVGNGLDLWSR
HHCCCCEEEECCHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
NLQDAQTIGLPVGPDTSFVLAEALLSAVDQLVASKIAGARGFRFVDDYEFVCDTLEQAEQ
CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHH
VLSVLQWALAEFELSLNPKKTTIKELPTALDTTWVNAFCELEFAAESPKLQRQLTRYFTD
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHH
AFELTCKFPGDPVLKYAAARLPDNPPDDAAANLIQRLSLQAACVDSGTLQHTLRSFWDHR
HHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
SAGRDLDLVALKRALDFIVQRHALLGHSSEVAWCIWAADVFTVQLSTSSANCIGNMVDDV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEEECCCCHHHHHHHHHH
VALTALDGIQKGAFETPPNTNNWEYIINNTSLKEEHWLLLFEAIGQGWLPPPVGGDPALA
HHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHH
DPFFNHLRTQDVRFYDTAATLDIPEPPGPDTY
HHHHHHHCCCCCEEEECEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA