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The map label for this gene is yciR [C]

Identifier: 39995644

GI number: 39995644

Start: 569343

End: 571391

Strand: Direct

Name: yciR [C]

Synonym: GSU0537

Alternate gene names: 39995644

Gene position: 569343-571391 (Clockwise)

Preceding gene: 39995643

Following gene: 39995647

Centisome position: 14.93

GC content: 64.76

Gene sequence:

>2049_bases
GTGAAGACCGTTGCCTTCCGTGCCGACGGGCAGGAGGCGGAGCCCCTTGAATTCGACCTGGTGGGCACTCCCTGCGAGCG
GGTGGTTCTGGATGCCTACTATTGCACTCCTGAAGGGGTCTGCACGCTGTTCCCCCTGGACCATCTGGCCATGGCCATGG
GGGTCGAGGGGTACGCGGGGATCGCCCTGACCGATGCGGCGGGCAACGTTCTGGGGCCGCTGGCCGTCTTGAGCCGCCGG
CCGCTGGGCGACAGCGAGCTGGCGGAAACGATGCTCCGGATCTTCGCGGCCCGCGCCTCGGCCGAGCTGGAGCGGACCAA
GGCCGAGCAGGCCCGGCGCGAGCAGCTCCACTTCCTCCAGGTCCTCATCGACTCCATCCCCCATCCCATCTTCTACAAGG
ACGCCGACCGGCGTTATATCGGCTGCAATGCCGCCCTGGAATCGTTCATCGGGCGCACGCGCGAGGAGATTATCGGCAAG
ACGGTCTTCGACATCGGCGCGGAGGGCCGGGCGCGCATCTGCGATGCCGTGGACCGCAAGCTGCTCGCTAACGGCGGGGT
GGAAAGCTACGACAGCACCATGATCCACACTGACGGCAGCATCCGTGACATCATCTTCAGCAAGACGGTCTTCGGGAATA
CCGACGGTTCCATCGGCGGCATCGTCGGCACGATCCTCGATATCACCGAACGCAAGCGGGCCGAGGAGGCTATCCAGCAA
CTGGCCTATTTCGATGCGCTCACGGGACTGCCGAACCGGACCCTGCTCAGGGACCGCGTCAGCCAGCTGCTGTCCCAGGC
GCGGCGGGAGGGGGGAGGTTTCGGCGTCCTGCACCTGGATGTGGACCGGTTCAAAGGGGTGAATGACTCGCTGGGGCATG
CCTGCGGCGACGTTCTGCTCTCCACCGTGGCCGGACGGATCGCTTCGAGTATCCGGGAGAGCGACACCGTGGCGCGGCTG
GGGAGCGACGAGTTCGTGGTGATTCTGCCGGGGGTGGGGCACGAAGAGGACGTGGTGGCGGTCGTCCGCAAGATAGTGGA
AGAGCTGAACCGGCCTATCGTCATCCAGGGTAATGATATCTTCTGCACCGCCAGCATCGGCATCGCCATCTATCCGACGG
ACGGTTCCAGTGCGGACATCCTGCTCAAAAATGCCGACATGGCCATGCACAAGGCCAAGGAGTTCGGGGGTGACGGCTAC
CAGTTCTACTCGAGCGAGTTGAACCACCGGGCCATGGAGCGGCTGACCCTGGAGACCAGCCTGCGCCGCGCGCTGGAGCG
CCGGGAGTTTCTCCTGCACTACCAGCCGCTGCTCGGTATCGGGTCAGGCCGGATTGTCGGGGTGGAGGCACTGTTGCGGT
GGGACTCGCCGGAACTGGGCATGGTGTCGCCGGCCCGTTTCATCCCCCTGGCCGAGGAGACGGGGCTCATCGTGCCGATC
GGCGAGTGGGTCCTGCGCTCGGCCTGCGAACAGCTCAGGGCCCTCCACGAGCTGGGCTACACCGAATTGTGCGTGTCCGT
GAACGTGTCGGCGCGGCAGTTCCGGCACGACGGGTTCTGCGCCATGGTGGCCGCCGTGCTGGCGGCAGTGGGGCTCGATC
CCCGGTATCTGGAGCTGGAACTTACCGAGAGCGTCATCATGGAGCGCTCAGAGACGGCCAAGGGGATTCTGCGGAAGCTG
AAGCAGATGGGGGTGTCGCTCGCCATCGATGATTTTGGTACCGGCTACTCATCCCTGAGTTACCTGAAGCACTTTCCCAT
CGACCGGCTCAAGATCGACCGCACCTTTGTCAAAGAAGTGACCGTGGACCAGGACAATGCCGCCATTGCCGAGGCGATCG
TCGCCCTGGCCCACGTGCTGAATCTGGATGTCGTGGCGGAAGGGGTGGAGACCGCCGAACAACTTGCCTTCCTGGCGGCG
CTCCGCTGCGACGTGGTCCAGGGGTATCACATCGCCCGTCCCCTTCCTCCCCGGAATCTGCTCGAATTCCTTGAAGCGCG
GCAGGAGGATCGTGCCGCCCGCCCCATGCTCAGGTCACTTCAACCGTAA

Upstream 100 bases:

>100_bases
GGGGGACCAGTTTTTCCACTCCCTGCTGGAGCATCTCACCAGGGCACTGGATGTGGAATACGCCTTCATCGCCGAATATA
CCGACCGGGAGGCCATGCGG

Downstream 100 bases:

>100_bases
TCTGCTTGGGCTTCACCTCCTCCCGCTTGGGAAGGGTGATGGTGAGGACCCCTTTGTCGGAGCTGGCCCTGACCTTCTCC
TGGTCGATGGTGGCGGGGAT

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 682; Mature: 682

Protein sequence:

>682_residues
MKTVAFRADGQEAEPLEFDLVGTPCERVVLDAYYCTPEGVCTLFPLDHLAMAMGVEGYAGIALTDAAGNVLGPLAVLSRR
PLGDSELAETMLRIFAARASAELERTKAEQARREQLHFLQVLIDSIPHPIFYKDADRRYIGCNAALESFIGRTREEIIGK
TVFDIGAEGRARICDAVDRKLLANGGVESYDSTMIHTDGSIRDIIFSKTVFGNTDGSIGGIVGTILDITERKRAEEAIQQ
LAYFDALTGLPNRTLLRDRVSQLLSQARREGGGFGVLHLDVDRFKGVNDSLGHACGDVLLSTVAGRIASSIRESDTVARL
GSDEFVVILPGVGHEEDVVAVVRKIVEELNRPIVIQGNDIFCTASIGIAIYPTDGSSADILLKNADMAMHKAKEFGGDGY
QFYSSELNHRAMERLTLETSLRRALERREFLLHYQPLLGIGSGRIVGVEALLRWDSPELGMVSPARFIPLAEETGLIVPI
GEWVLRSACEQLRALHELGYTELCVSVNVSARQFRHDGFCAMVAAVLAAVGLDPRYLELELTESVIMERSETAKGILRKL
KQMGVSLAIDDFGTGYSSLSYLKHFPIDRLKIDRTFVKEVTVDQDNAAIAEAIVALAHVLNLDVVAEGVETAEQLAFLAA
LRCDVVQGYHIARPLPPRNLLEFLEARQEDRAARPMLRSLQP

Sequences:

>Translated_682_residues
MKTVAFRADGQEAEPLEFDLVGTPCERVVLDAYYCTPEGVCTLFPLDHLAMAMGVEGYAGIALTDAAGNVLGPLAVLSRR
PLGDSELAETMLRIFAARASAELERTKAEQARREQLHFLQVLIDSIPHPIFYKDADRRYIGCNAALESFIGRTREEIIGK
TVFDIGAEGRARICDAVDRKLLANGGVESYDSTMIHTDGSIRDIIFSKTVFGNTDGSIGGIVGTILDITERKRAEEAIQQ
LAYFDALTGLPNRTLLRDRVSQLLSQARREGGGFGVLHLDVDRFKGVNDSLGHACGDVLLSTVAGRIASSIRESDTVARL
GSDEFVVILPGVGHEEDVVAVVRKIVEELNRPIVIQGNDIFCTASIGIAIYPTDGSSADILLKNADMAMHKAKEFGGDGY
QFYSSELNHRAMERLTLETSLRRALERREFLLHYQPLLGIGSGRIVGVEALLRWDSPELGMVSPARFIPLAEETGLIVPI
GEWVLRSACEQLRALHELGYTELCVSVNVSARQFRHDGFCAMVAAVLAAVGLDPRYLELELTESVIMERSETAKGILRKL
KQMGVSLAIDDFGTGYSSLSYLKHFPIDRLKIDRTFVKEVTVDQDNAAIAEAIVALAHVLNLDVVAEGVETAEQLAFLAA
LRCDVVQGYHIARPLPPRNLLEFLEARQEDRAARPMLRSLQP
>Mature_682_residues
MKTVAFRADGQEAEPLEFDLVGTPCERVVLDAYYCTPEGVCTLFPLDHLAMAMGVEGYAGIALTDAAGNVLGPLAVLSRR
PLGDSELAETMLRIFAARASAELERTKAEQARREQLHFLQVLIDSIPHPIFYKDADRRYIGCNAALESFIGRTREEIIGK
TVFDIGAEGRARICDAVDRKLLANGGVESYDSTMIHTDGSIRDIIFSKTVFGNTDGSIGGIVGTILDITERKRAEEAIQQ
LAYFDALTGLPNRTLLRDRVSQLLSQARREGGGFGVLHLDVDRFKGVNDSLGHACGDVLLSTVAGRIASSIRESDTVARL
GSDEFVVILPGVGHEEDVVAVVRKIVEELNRPIVIQGNDIFCTASIGIAIYPTDGSSADILLKNADMAMHKAKEFGGDGY
QFYSSELNHRAMERLTLETSLRRALERREFLLHYQPLLGIGSGRIVGVEALLRWDSPELGMVSPARFIPLAEETGLIVPI
GEWVLRSACEQLRALHELGYTELCVSVNVSARQFRHDGFCAMVAAVLAAVGLDPRYLELELTESVIMERSETAKGILRKL
KQMGVSLAIDDFGTGYSSLSYLKHFPIDRLKIDRTFVKEVTVDQDNAAIAEAIVALAHVLNLDVVAEGVETAEQLAFLAA
LRCDVVQGYHIARPLPPRNLLEFLEARQEDRAARPMLRSLQP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=565, Percent_Identity=34.1592920353982, Blast_Score=323, Evalue=2e-89,
Organism=Escherichia coli, GI87081921, Length=483, Percent_Identity=35.8178053830228, Blast_Score=282, Evalue=4e-77,
Organism=Escherichia coli, GI226510982, Length=448, Percent_Identity=31.9196428571429, Blast_Score=193, Evalue=3e-50,
Organism=Escherichia coli, GI1790496, Length=254, Percent_Identity=36.6141732283465, Blast_Score=166, Evalue=5e-42,
Organism=Escherichia coli, GI1786507, Length=250, Percent_Identity=35.2, Blast_Score=161, Evalue=1e-40,
Organism=Escherichia coli, GI87081980, Length=266, Percent_Identity=35.3383458646617, Blast_Score=152, Evalue=1e-37,
Organism=Escherichia coli, GI87081845, Length=254, Percent_Identity=35.4330708661417, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=33.4710743801653, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=33.0612244897959, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=32.1138211382114, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788849, Length=460, Percent_Identity=25.8695652173913, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1788381, Length=553, Percent_Identity=24.7739602169982, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI87082096, Length=250, Percent_Identity=31.6, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI87081881, Length=295, Percent_Identity=29.1525423728814, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=33.9393939393939, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87081977, Length=327, Percent_Identity=25.3822629969419, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=35.625, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=208, Percent_Identity=28.3653846153846, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=31.8435754189944, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1788956, Length=156, Percent_Identity=35.8974358974359, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787802, Length=159, Percent_Identity=32.7044025157233, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=85, Percent_Identity=42.3529411764706, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=30.9090909090909, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI1787410, Length=221, Percent_Identity=25.7918552036199, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI48994928, Length=182, Percent_Identity=25.2747252747253, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=31.5151515151515, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 74791; Mature: 74791

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVAFRADGQEAEPLEFDLVGTPCERVVLDAYYCTPEGVCTLFPLDHLAMAMGVEGYAG
CCEEEEECCCCCCCCEEEEEECCCHHHHHHHHEEECCCCCEEECCHHHHHHHHCCCCCCC
IALTDAAGNVLGPLAVLSRRPLGDSELAETMLRIFAARASAELERTKAEQARREQLHFLQ
EEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLIDSIPHPIFYKDADRRYIGCNAALESFIGRTREEIIGKTVFDIGAEGRARICDAVDRK
HHHHHCCCCEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LLANGGVESYDSTMIHTDGSIRDIIFSKTVFGNTDGSIGGIVGTILDITERKRAEEAIQQ
HHHCCCCCCCCCEEEECCCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAYFDALTGLPNRTLLRDRVSQLLSQARREGGGFGVLHLDVDRFKGVNDSLGHACGDVLL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHH
STVAGRIASSIRESDTVARLGSDEFVVILPGVGHEEDVVAVVRKIVEELNRPIVIQGNDI
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCEE
FCTASIGIAIYPTDGSSADILLKNADMAMHKAKEFGGDGYQFYSSELNHRAMERLTLETS
EEEEECCEEEEECCCCCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LRRALERREFLLHYQPLLGIGSGRIVGVEALLRWDSPELGMVSPARFIPLAEETGLIVPI
HHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCCCCCCCHHCCCCCCCCCEEEEH
GEWVLRSACEQLRALHELGYTELCVSVNVSARQFRHDGFCAMVAAVLAAVGLDPRYLELE
HHHHHHHHHHHHHHHHHCCHHHEEEEECCHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEE
LTESVIMERSETAKGILRKLKQMGVSLAIDDFGTGYSSLSYLKHFPIDRLKIDRTFVKEV
EHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEHHHHHHHHH
TVDQDNAAIAEAIVALAHVLNLDVVAEGVETAEQLAFLAALRCDVVQGYHIARPLPPRNL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LEFLEARQEDRAARPMLRSLQP
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTVAFRADGQEAEPLEFDLVGTPCERVVLDAYYCTPEGVCTLFPLDHLAMAMGVEGYAG
CCEEEEECCCCCCCCEEEEEECCCHHHHHHHHEEECCCCCEEECCHHHHHHHHCCCCCCC
IALTDAAGNVLGPLAVLSRRPLGDSELAETMLRIFAARASAELERTKAEQARREQLHFLQ
EEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLIDSIPHPIFYKDADRRYIGCNAALESFIGRTREEIIGKTVFDIGAEGRARICDAVDRK
HHHHHCCCCEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
LLANGGVESYDSTMIHTDGSIRDIIFSKTVFGNTDGSIGGIVGTILDITERKRAEEAIQQ
HHHCCCCCCCCCEEEECCCCHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LAYFDALTGLPNRTLLRDRVSQLLSQARREGGGFGVLHLDVDRFKGVNDSLGHACGDVLL
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHH
STVAGRIASSIRESDTVARLGSDEFVVILPGVGHEEDVVAVVRKIVEELNRPIVIQGNDI
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCEE
FCTASIGIAIYPTDGSSADILLKNADMAMHKAKEFGGDGYQFYSSELNHRAMERLTLETS
EEEEECCEEEEECCCCCCEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LRRALERREFLLHYQPLLGIGSGRIVGVEALLRWDSPELGMVSPARFIPLAEETGLIVPI
HHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCCCCCCCHHCCCCCCCCCEEEEH
GEWVLRSACEQLRALHELGYTELCVSVNVSARQFRHDGFCAMVAAVLAAVGLDPRYLELE
HHHHHHHHHHHHHHHHHCCHHHEEEEECCHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEE
LTESVIMERSETAKGILRKLKQMGVSLAIDDFGTGYSSLSYLKHFPIDRLKIDRTFVKEV
EHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEHHHHHHHHH
TVDQDNAAIAEAIVALAHVLNLDVVAEGVETAEQLAFLAALRCDVVQGYHIARPLPPRNL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
LEFLEARQEDRAARPMLRSLQP
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]