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The map label for this gene is yciR [C]

Identifier: 39995582

GI number: 39995582

Start: 503803

End: 506181

Strand: Direct

Name: yciR [C]

Synonym: GSU0474

Alternate gene names: 39995582

Gene position: 503803-506181 (Clockwise)

Preceding gene: 39995581

Following gene: 39995584

Centisome position: 13.21

GC content: 60.61

Gene sequence:

>2379_bases
ATGGATTTCACAAAAATCTCCGCACTCCACTACCGCCTTCCTTCACCGGTGCGGCAGTTCATCGTGCTGCTTTCGATCAT
TTTTCTGATCGAAATGCTGCTCATGGCGGTCCTGCCCCAAGTTACCGGCCGTGAAGTCGAGTTTAAGGATGCACTTGTCG
ACAGCATGGGGCTCGTCACGGTTGCCGCGCCGTTTCTGTGGGCTTTCATTGTGCGTCCCCTGCGCCGCACGGCCGTTGCG
GCCGTTTTCCGGGAGGAGGTACTCCTCCGCCAGATGGTCGACGGGGTGATTACTTTCGGGGAAGACGGCACGATCCGTTC
CCTCAATCCGGCCGCCGAGCGGATGTTCGGCTATCGGGACGATGAGGCCGCCGGCATGGCCATCGACTGCCTGCTGTCGG
CCGACGGGGGCTATTTCCGATTTGCGGTACAGGCATCCGGCGGCCATGGCACACGCCAGCTCGCCTATGAACTGGAAGGG
ATCCGCCGGGATGGCAGCCGCTTCGTTGCCGATCTTTCCGTCAGCCGGATCGTTTTTGAAGATCACCGGGCAGTGATCGG
CATTGTCCGGGACATCACCGCCCGCAAACGGGACGAGCAGAATCTCCTCGTCTTCAAACGGGCCATCGAGTCGAGCGTAA
ACGGCATCACTATCACCGACGCGACTAACGGCGAAAACCTAATCATTTACGTGAATCCTGCATTCGAGCGGATGACCGGC
TACGCGGGACACGAGGTTCTTGGGAAGAACCCGCGTTTTCTCAGGGGGGATGACCGGGACCAGGTGGAACTCAGGAAGCT
GGCCATGGCCCTGGAGGAACGCAGGGAGGGCTACTTTGTCCTGCGCAACTACCGCAAGGACGGCAGCCAGTTCATGAACG
AACTTTACGTGGCGCCGGTGCGCGACCGTGATGGCGCAGTCACCAATTACATCGGCATCATGAATGATATCAGCGACCAG
CGGCGCTACGAGGAACAGCTGGTCTACCAGGCCACTCACGACCCCCTGACCGGCCTTCCCAACCGTAATCTCCTGCAGGA
CCGCCTTGGGCAGGCGCTCGCTCTGGAATCCTTCCGCCGTCGCAATCCCATCGGCGTCATGTTCCTGGATCTCGACAACT
TCAAAAAGATCAACGATACCCTGGGGCACACGGTGGGAGACATGCTGCTCAAGGCCGTCGCCAACCGCCTGCGCAACTGC
GTGCGCGGCGGCGACACGGTTTCGCGGCTGGGAGGGGACGAATACATCCTTATCCTTCCCAATGTAAAGGAAATGCATGA
CGTGACCACTGTGGCCAAGAAGCTGCTCGGCGTATTTTCCACGCCGTTCCTGCTCATGGGACACGAGCTCTACATCACGG
CAAGCATCGGTATCACCCTCTTCCCCTCCGATGGCGACACGGTGGATGCGCTCCTCAAGAATGCCGATGCCGCCATGTAT
CATGCCAAGGAGCAGGGGAAGAACAACTACCAGTTCTATTCAGAGGAGATGAACACGCGGGTCTTCGAGCGGATGGCTCT
GGAAACGAGCCTCCATCGGGCGATTCGGCAGCATGAGTTTCTGCTCTGCTACCAGCCTCGGGTCGATCTGCGGACCGGAA
GGATCAGCGGGGTGGAAGCCCTTGTGCGTTGGAACCACCCGGAGATGGGGCTCGTGCCGCCGGCCAGGTTCATCCCTCTG
GCCGAGGAAACGGGGCTCATCGTGCCCATCGGCGAGTGGGTCCTGCGCACCGCCTGCGCCCAGAACAAGGCATGGCAGGA
TGCGGGGCTCCCGCCACTGAGGATGGCGGTGAACCTTTCGGCCCGGCAGTTCCGTCAGGAAAATCTCATCCAGATGGTCG
CCGACGCCTTGGCCGAAACGGGTCTCGACCCCCGCTGGCTGGAGCTGGAGCTGACCGAAAGCCTCCTCATGGAGCGGGCC
GAGCAGTCCGTGTCGATCCTCCGCTCCCTGGCGGATATGGGGATCGACATCGCCGTGGACGATTTCGGCACCGGCTATTC
GTCTCTGGGGTATCTCAAGCGGTTCCCGATTACGAACCTGAAGATCGATCAATCGTTCATCCGCGACATAGCGAGCGATC
CGGACGACGCCATTCTGGTGCGGACCATCATCACCATGGCCCACGGCCTCGGCATGAAGACCGTCGGCGAAGGGGTCGAA
TCTCTTGAGCAGATTGATTTCCTCTATCGGCACGGCTGCGAAGAAGTGCAGGGATACTATTTCAGCAGGCCGCTTACCGC
TGAGGGATGCGAGGAGCTGCTTCGCGAGGAGAGGTTTCTGGATCTTCGGGCGCTCCGGGATGGGTTGCCGGGCCAGAGGA
GCGAGGAGCGCATTCGCGCCCTGGCGTCATCCGCTGATGACTGCCGCGTTACAGCGTAA

Upstream 100 bases:

>100_bases
CGCGACGGATGCCGATACGTATTGAGTAGTGTTCCCGTATCCCTGATGTCCCGCTGTCGCGCGGGCCGGGCGGGCTATTC
CCCTCTCAGCGGAGTTCAGC

Downstream 100 bases:

>100_bases
AATAGAATACGGCTCCGGCGCCCTCTTCCCCTTGGGCCCAGATTGTGCCACCATGGCGGGAGATGATCCTGTGGACCGTT
GCGAGGCCGATGCCGTGCCC

Product: sensory box/GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 792; Mature: 792

Protein sequence:

>792_residues
MDFTKISALHYRLPSPVRQFIVLLSIIFLIEMLLMAVLPQVTGREVEFKDALVDSMGLVTVAAPFLWAFIVRPLRRTAVA
AVFREEVLLRQMVDGVITFGEDGTIRSLNPAAERMFGYRDDEAAGMAIDCLLSADGGYFRFAVQASGGHGTRQLAYELEG
IRRDGSRFVADLSVSRIVFEDHRAVIGIVRDITARKRDEQNLLVFKRAIESSVNGITITDATNGENLIIYVNPAFERMTG
YAGHEVLGKNPRFLRGDDRDQVELRKLAMALEERREGYFVLRNYRKDGSQFMNELYVAPVRDRDGAVTNYIGIMNDISDQ
RRYEEQLVYQATHDPLTGLPNRNLLQDRLGQALALESFRRRNPIGVMFLDLDNFKKINDTLGHTVGDMLLKAVANRLRNC
VRGGDTVSRLGGDEYILILPNVKEMHDVTTVAKKLLGVFSTPFLLMGHELYITASIGITLFPSDGDTVDALLKNADAAMY
HAKEQGKNNYQFYSEEMNTRVFERMALETSLHRAIRQHEFLLCYQPRVDLRTGRISGVEALVRWNHPEMGLVPPARFIPL
AEETGLIVPIGEWVLRTACAQNKAWQDAGLPPLRMAVNLSARQFRQENLIQMVADALAETGLDPRWLELELTESLLMERA
EQSVSILRSLADMGIDIAVDDFGTGYSSLGYLKRFPITNLKIDQSFIRDIASDPDDAILVRTIITMAHGLGMKTVGEGVE
SLEQIDFLYRHGCEEVQGYYFSRPLTAEGCEELLREERFLDLRALRDGLPGQRSEERIRALASSADDCRVTA

Sequences:

>Translated_792_residues
MDFTKISALHYRLPSPVRQFIVLLSIIFLIEMLLMAVLPQVTGREVEFKDALVDSMGLVTVAAPFLWAFIVRPLRRTAVA
AVFREEVLLRQMVDGVITFGEDGTIRSLNPAAERMFGYRDDEAAGMAIDCLLSADGGYFRFAVQASGGHGTRQLAYELEG
IRRDGSRFVADLSVSRIVFEDHRAVIGIVRDITARKRDEQNLLVFKRAIESSVNGITITDATNGENLIIYVNPAFERMTG
YAGHEVLGKNPRFLRGDDRDQVELRKLAMALEERREGYFVLRNYRKDGSQFMNELYVAPVRDRDGAVTNYIGIMNDISDQ
RRYEEQLVYQATHDPLTGLPNRNLLQDRLGQALALESFRRRNPIGVMFLDLDNFKKINDTLGHTVGDMLLKAVANRLRNC
VRGGDTVSRLGGDEYILILPNVKEMHDVTTVAKKLLGVFSTPFLLMGHELYITASIGITLFPSDGDTVDALLKNADAAMY
HAKEQGKNNYQFYSEEMNTRVFERMALETSLHRAIRQHEFLLCYQPRVDLRTGRISGVEALVRWNHPEMGLVPPARFIPL
AEETGLIVPIGEWVLRTACAQNKAWQDAGLPPLRMAVNLSARQFRQENLIQMVADALAETGLDPRWLELELTESLLMERA
EQSVSILRSLADMGIDIAVDDFGTGYSSLGYLKRFPITNLKIDQSFIRDIASDPDDAILVRTIITMAHGLGMKTVGEGVE
SLEQIDFLYRHGCEEVQGYYFSRPLTAEGCEELLREERFLDLRALRDGLPGQRSEERIRALASSADDCRVTA
>Mature_792_residues
MDFTKISALHYRLPSPVRQFIVLLSIIFLIEMLLMAVLPQVTGREVEFKDALVDSMGLVTVAAPFLWAFIVRPLRRTAVA
AVFREEVLLRQMVDGVITFGEDGTIRSLNPAAERMFGYRDDEAAGMAIDCLLSADGGYFRFAVQASGGHGTRQLAYELEG
IRRDGSRFVADLSVSRIVFEDHRAVIGIVRDITARKRDEQNLLVFKRAIESSVNGITITDATNGENLIIYVNPAFERMTG
YAGHEVLGKNPRFLRGDDRDQVELRKLAMALEERREGYFVLRNYRKDGSQFMNELYVAPVRDRDGAVTNYIGIMNDISDQ
RRYEEQLVYQATHDPLTGLPNRNLLQDRLGQALALESFRRRNPIGVMFLDLDNFKKINDTLGHTVGDMLLKAVANRLRNC
VRGGDTVSRLGGDEYILILPNVKEMHDVTTVAKKLLGVFSTPFLLMGHELYITASIGITLFPSDGDTVDALLKNADAAMY
HAKEQGKNNYQFYSEEMNTRVFERMALETSLHRAIRQHEFLLCYQPRVDLRTGRISGVEALVRWNHPEMGLVPPARFIPL
AEETGLIVPIGEWVLRTACAQNKAWQDAGLPPLRMAVNLSARQFRQENLIQMVADALAETGLDPRWLELELTESLLMERA
EQSVSILRSLADMGIDIAVDDFGTGYSSLGYLKRFPITNLKIDQSFIRDIASDPDDAILVRTIITMAHGLGMKTVGEGVE
SLEQIDFLYRHGCEEVQGYYFSRPLTAEGCEELLREERFLDLRALRDGLPGQRSEERIRALASSADDCRVTA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=578, Percent_Identity=35.9861591695502, Blast_Score=360, Evalue=1e-100,
Organism=Escherichia coli, GI87081921, Length=687, Percent_Identity=31.5866084425036, Blast_Score=294, Evalue=1e-80,
Organism=Escherichia coli, GI226510982, Length=442, Percent_Identity=30.7692307692308, Blast_Score=215, Evalue=1e-56,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=32.5102880658436, Blast_Score=152, Evalue=9e-38,
Organism=Escherichia coli, GI87081845, Length=251, Percent_Identity=36.6533864541833, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1786507, Length=260, Percent_Identity=32.3076923076923, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI1788502, Length=254, Percent_Identity=33.0708661417323, Blast_Score=145, Evalue=9e-36,
Organism=Escherichia coli, GI87081980, Length=248, Percent_Identity=33.0645161290323, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI87081743, Length=256, Percent_Identity=33.984375, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1788381, Length=573, Percent_Identity=25.6544502617801, Blast_Score=127, Evalue=4e-30,
Organism=Escherichia coli, GI1787055, Length=458, Percent_Identity=23.3624454148472, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788849, Length=242, Percent_Identity=33.8842975206612, Blast_Score=113, Evalue=5e-26,
Organism=Escherichia coli, GI87082096, Length=432, Percent_Identity=25, Blast_Score=105, Evalue=2e-23,
Organism=Escherichia coli, GI87081881, Length=207, Percent_Identity=31.4009661835749, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=38.5093167701863, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87081977, Length=184, Percent_Identity=32.6086956521739, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI145693134, Length=214, Percent_Identity=29.4392523364486, Blast_Score=93, Evalue=8e-20,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=32, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=31.2849162011173, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=173, Percent_Identity=31.2138728323699, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=32.3170731707317, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=167, Percent_Identity=30.5389221556886, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1789650, Length=487, Percent_Identity=23.2032854209446, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI87081974, Length=86, Percent_Identity=38.3720930232558, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787410, Length=139, Percent_Identity=28.7769784172662, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 89189; Mature: 89189

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFTKISALHYRLPSPVRQFIVLLSIIFLIEMLLMAVLPQVTGREVEFKDALVDSMGLVT
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHH
VAAPFLWAFIVRPLRRTAVAAVFREEVLLRQMVDGVITFGEDGTIRSLNPAAERMFGYRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHCCCCC
DEAAGMAIDCLLSADGGYFRFAVQASGGHGTRQLAYELEGIRRDGSRFVADLSVSRIVFE
CCCCCEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DHRAVIGIVRDITARKRDEQNLLVFKRAIESSVNGITITDATNGENLIIYVNPAFERMTG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCHHHHHCC
YAGHEVLGKNPRFLRGDDRDQVELRKLAMALEERREGYFVLRNYRKDGSQFMNELYVAPV
CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCC
RDRDGAVTNYIGIMNDISDQRRYEEQLVYQATHDPLTGLPNRNLLQDRLGQALALESFRR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
RNPIGVMFLDLDNFKKINDTLGHTVGDMLLKAVANRLRNCVRGGDTVSRLGGDEYILILP
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECC
NVKEMHDVTTVAKKLLGVFSTPFLLMGHELYITASIGITLFPSDGDTVDALLKNADAAMY
CHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEEEECEEEECCCCCHHHHHHHCCCHHHH
HAKEQGKNNYQFYSEEMNTRVFERMALETSLHRAIRQHEFLLCYQPRVDLRTGRISGVEA
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHH
LVRWNHPEMGLVPPARFIPLAEETGLIVPIGEWVLRTACAQNKAWQDAGLPPLRMAVNLS
HHCCCCCCCCCCCCHHHCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHEECCH
ARQFRQENLIQMVADALAETGLDPRWLELELTESLLMERAEQSVSILRSLADMGIDIAVD
HHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DFGTGYSSLGYLKRFPITNLKIDQSFIRDIASDPDDAILVRTIITMAHGLGMKTVGEGVE
CCCCCHHHHHHHHHCCCCCEEECHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
SLEQIDFLYRHGCEEVQGYYFSRPLTAEGCEELLREERFLDLRALRDGLPGQRSEERIRA
HHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LASSADDCRVTA
HHCCCCCCEECC
>Mature Secondary Structure
MDFTKISALHYRLPSPVRQFIVLLSIIFLIEMLLMAVLPQVTGREVEFKDALVDSMGLVT
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHH
VAAPFLWAFIVRPLRRTAVAAVFREEVLLRQMVDGVITFGEDGTIRSLNPAAERMFGYRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHCCCCC
DEAAGMAIDCLLSADGGYFRFAVQASGGHGTRQLAYELEGIRRDGSRFVADLSVSRIVFE
CCCCCEEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DHRAVIGIVRDITARKRDEQNLLVFKRAIESSVNGITITDATNGENLIIYVNPAFERMTG
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCHHHHHCC
YAGHEVLGKNPRFLRGDDRDQVELRKLAMALEERREGYFVLRNYRKDGSQFMNELYVAPV
CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCC
RDRDGAVTNYIGIMNDISDQRRYEEQLVYQATHDPLTGLPNRNLLQDRLGQALALESFRR
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
RNPIGVMFLDLDNFKKINDTLGHTVGDMLLKAVANRLRNCVRGGDTVSRLGGDEYILILP
CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEECC
NVKEMHDVTTVAKKLLGVFSTPFLLMGHELYITASIGITLFPSDGDTVDALLKNADAAMY
CHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEEEECEEEECCCCCHHHHHHHCCCHHHH
HAKEQGKNNYQFYSEEMNTRVFERMALETSLHRAIRQHEFLLCYQPRVDLRTGRISGVEA
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHH
LVRWNHPEMGLVPPARFIPLAEETGLIVPIGEWVLRTACAQNKAWQDAGLPPLRMAVNLS
HHCCCCCCCCCCCCHHHCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCHHHHEECCH
ARQFRQENLIQMVADALAETGLDPRWLELELTESLLMERAEQSVSILRSLADMGIDIAVD
HHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DFGTGYSSLGYLKRFPITNLKIDQSFIRDIASDPDDAILVRTIITMAHGLGMKTVGEGVE
CCCCCHHHHHHHHHCCCCCEEECHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
SLEQIDFLYRHGCEEVQGYYFSRPLTAEGCEELLREERFLDLRALRDGLPGQRSEERIRA
HHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LASSADDCRVTA
HHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]