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The map label for this gene is ubiD [C]

Identifier: 39995545

GI number: 39995545

Start: 469239

End: 470654

Strand: Direct

Name: ubiD [C]

Synonym: GSU0437

Alternate gene names: 39995545

Gene position: 469239-470654 (Clockwise)

Preceding gene: 39995544

Following gene: 39995546

Centisome position: 12.3

GC content: 68.57

Gene sequence:

>1416_bases
ATGGCTAACGGTGATCTTCACGATTTTCTTGCCGAGTTGGAACGGCTCGGTGACCTTCATCGGGTGGCGGCTGAAGTCGA
CCCGGTGCTTGAGGTGGCCGCCATCACCGACCGGGTGAGCAAGCTGCCGGGCGGGGGGAAGGGGCTTCTTTTCGAGCGCG
TGAAGGGCTCCCGCTTCCCACTGGTCACCAACGTCTTCGGCTCGGCCGGACGGGTGGCAGCCGCCCTTGGCGCGGCAACC
CTCGACGACTTGACGGCGCGGATGGAGTCGCTCCTCGCCGCCGTGCCCCCCGCGAAAACGGCATCCCCCCTGGAGGCGAT
GGCCTCCCTGGCCGAGATGCGGCGCTTTGCCCCCATGATCGTGGAGAAGGCGCCCTGCCAGGAGGTGGTGGAGGCGCCGG
ACCTCCTGCGCTACCCGTTTCCGCACTCCTGGCCCGGCGACGGTGGCCGCTTCATCACTCTTCCCCTTGTTGTTACCCGT
GACCCGGAGACGAACACTCCCAACTGCGGCATGTACCGCGTGCGGGTGGTGGATGGAGCCAGCGCCGGCATCCGGTGGTA
TGCGGGGAAGGGGGGCGAGCTCCACTGTCGGCGCCATCGGGAGCGCGGGGAGCGGATGCCCGTGGCCGTGGCCATCGGCG
GCGATCCGGCGGCAATCCTGGCGGCGATCCTTCCCCTTCCCGAGGGGTTCGACGAAATGCTCTTTGCTGGTTTTCTCCGG
GGGCGCCCCCTGGAGCTGGCGCGCTGCCGGACCAGCGACCTGCTGGTCCCGGCCGGGGCGGAACTGGTTCTGGAAGGCTA
TGTGGAGCCCGGCGAGACGGTCATGGACGGCGCCTTCGGCAACCATACGGGCTTTTACGCCCCGGCGGCATCGGTGCCCC
TCATGCGGCTCACCTGCATAACGCGCCGCGCCGATTGCCTCTGCCCGGCCACGGTGGTGGGCCGGCCCCCCATGGAGGAC
TGCTATCTGGCCAAGGCGGCGGAGCGGCTCCTGCTGCCGGTGCTCAGGATGCGCTGGCCCGAGATCGTCGACATCAACTA
TCCGCTGGAATGGATATTCAACGGAGGCGCTGTTCTTTCGCTGCGGGAATGCTCTTCCTCCCGGGTCCGCCGGATCGTCA
CGGAACTTTGGAGTTCGGGGCTTGCCGGGCCCGGCAGGCTTCTGGTGGCGGTGGACGAGGGGACGCGGGTCGATGATCCC
GCCGACGTGGCTTGGCGGGCCATGAACGCGGTGGACTGGCGGACCGATCTGATCATTGCCGAGCGTGACGCCGCAGCCGC
CTGGCCCGGCCTCGGTTCGCGGCTGGCCATCGACGCCACCCGATCCGCTGCCCGCCGCTACGGAGCAGAAGAACTCGTGC
CGGACCGGGAGACGGCCCGGCGTGTGGACTCGCGTTGGAGGGAATACGGATTCTGA

Upstream 100 bases:

>100_bases
CGGGCATCCCGTTCCGCGTCGTTAAAAGGGTTGTCACCCGCGGGTCGAAATGCTACAAGATTTTATTTGGCGTCATTTCG
CACGGTTCTGTCTGAACTCC

Downstream 100 bases:

>100_bases
TGATGTTCCGGCTTGGCTGGGGAATACTCGTATGCCTCTTTCTGGCTCTGGCAGCGGGATGCTATCACTTGCGGCTCGAG
CCGGCTGCGTTGCCGGTTCA

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MANGDLHDFLAELERLGDLHRVAAEVDPVLEVAAITDRVSKLPGGGKGLLFERVKGSRFPLVTNVFGSAGRVAAALGAAT
LDDLTARMESLLAAVPPAKTASPLEAMASLAEMRRFAPMIVEKAPCQEVVEAPDLLRYPFPHSWPGDGGRFITLPLVVTR
DPETNTPNCGMYRVRVVDGASAGIRWYAGKGGELHCRRHRERGERMPVAVAIGGDPAAILAAILPLPEGFDEMLFAGFLR
GRPLELARCRTSDLLVPAGAELVLEGYVEPGETVMDGAFGNHTGFYAPAASVPLMRLTCITRRADCLCPATVVGRPPMED
CYLAKAAERLLLPVLRMRWPEIVDINYPLEWIFNGGAVLSLRECSSSRVRRIVTELWSSGLAGPGRLLVAVDEGTRVDDP
ADVAWRAMNAVDWRTDLIIAERDAAAAWPGLGSRLAIDATRSAARRYGAEELVPDRETARRVDSRWREYGF

Sequences:

>Translated_471_residues
MANGDLHDFLAELERLGDLHRVAAEVDPVLEVAAITDRVSKLPGGGKGLLFERVKGSRFPLVTNVFGSAGRVAAALGAAT
LDDLTARMESLLAAVPPAKTASPLEAMASLAEMRRFAPMIVEKAPCQEVVEAPDLLRYPFPHSWPGDGGRFITLPLVVTR
DPETNTPNCGMYRVRVVDGASAGIRWYAGKGGELHCRRHRERGERMPVAVAIGGDPAAILAAILPLPEGFDEMLFAGFLR
GRPLELARCRTSDLLVPAGAELVLEGYVEPGETVMDGAFGNHTGFYAPAASVPLMRLTCITRRADCLCPATVVGRPPMED
CYLAKAAERLLLPVLRMRWPEIVDINYPLEWIFNGGAVLSLRECSSSRVRRIVTELWSSGLAGPGRLLVAVDEGTRVDDP
ADVAWRAMNAVDWRTDLIIAERDAAAAWPGLGSRLAIDATRSAARRYGAEELVPDRETARRVDSRWREYGF
>Mature_470_residues
ANGDLHDFLAELERLGDLHRVAAEVDPVLEVAAITDRVSKLPGGGKGLLFERVKGSRFPLVTNVFGSAGRVAAALGAATL
DDLTARMESLLAAVPPAKTASPLEAMASLAEMRRFAPMIVEKAPCQEVVEAPDLLRYPFPHSWPGDGGRFITLPLVVTRD
PETNTPNCGMYRVRVVDGASAGIRWYAGKGGELHCRRHRERGERMPVAVAIGGDPAAILAAILPLPEGFDEMLFAGFLRG
RPLELARCRTSDLLVPAGAELVLEGYVEPGETVMDGAFGNHTGFYAPAASVPLMRLTCITRRADCLCPATVVGRPPMEDC
YLAKAAERLLLPVLRMRWPEIVDINYPLEWIFNGGAVLSLRECSSSRVRRIVTELWSSGLAGPGRLLVAVDEGTRVDDPA
DVAWRAMNAVDWRTDLIIAERDAAAAWPGLGSRLAIDATRSAARRYGAEELVPDRETARRVDSRWREYGF

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=491, Percent_Identity=34.826883910387, Blast_Score=274, Evalue=1e-74,
Organism=Saccharomyces cerevisiae, GI6320748, Length=328, Percent_Identity=26.5243902439024, Blast_Score=101, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR022390
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 51184; Mature: 51053

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANGDLHDFLAELERLGDLHRVAAEVDPVLEVAAITDRVSKLPGGGKGLLFERVKGSRFP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
LVTNVFGSAGRVAAALGAATLDDLTARMESLLAAVPPAKTASPLEAMASLAEMRRFAPMI
CHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
VEKAPCQEVVEAPDLLRYPFPHSWPGDGGRFITLPLVVTRDPETNTPNCGMYRVRVVDGA
HCCCCHHHHHCCCHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECC
SAGIRWYAGKGGELHCRRHRERGERMPVAVAIGGDPAAILAAILPLPEGFDEMLFAGFLR
CCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHC
GRPLELARCRTSDLLVPAGAELVLEGYVEPGETVMDGAFGNHTGFYAPAASVPLMRLTCI
CCCCHHHHCCCCCEEECCCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHH
TRRADCLCPATVVGRPPMEDCYLAKAAERLLLPVLRMRWPEIVDINYPLEWIFNGGAVLS
HHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEECCCCEEE
LRECSSSRVRRIVTELWSSGLAGPGRLLVAVDEGTRVDDPADVAWRAMNAVDWRTDLIIA
EHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEE
ERDAAAAWPGLGSRLAIDATRSAARRYGAEELVPDRETARRVDSRWREYGF
ECCCCCCCCCCCCEEEEHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ANGDLHDFLAELERLGDLHRVAAEVDPVLEVAAITDRVSKLPGGGKGLLFERVKGSRFP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCC
LVTNVFGSAGRVAAALGAATLDDLTARMESLLAAVPPAKTASPLEAMASLAEMRRFAPMI
CHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
VEKAPCQEVVEAPDLLRYPFPHSWPGDGGRFITLPLVVTRDPETNTPNCGMYRVRVVDGA
HCCCCHHHHHCCCHHHCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECC
SAGIRWYAGKGGELHCRRHRERGERMPVAVAIGGDPAAILAAILPLPEGFDEMLFAGFLR
CCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHC
GRPLELARCRTSDLLVPAGAELVLEGYVEPGETVMDGAFGNHTGFYAPAASVPLMRLTCI
CCCCHHHHCCCCCEEECCCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHH
TRRADCLCPATVVGRPPMEDCYLAKAAERLLLPVLRMRWPEIVDINYPLEWIFNGGAVLS
HHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEECCCCEEE
LRECSSSRVRRIVTELWSSGLAGPGRLLVAVDEGTRVDDPADVAWRAMNAVDWRTDLIIA
EHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEE
ERDAAAAWPGLGSRLAIDATRSAARRYGAEELVPDRETARRVDSRWREYGF
ECCCCCCCCCCCCEEEEHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]