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The map label for this gene is fliR [H]

Identifier: 39995533

GI number: 39995533

Start: 454550

End: 455344

Strand: Direct

Name: fliR [H]

Synonym: GSU0425

Alternate gene names: 39995533

Gene position: 454550-455344 (Clockwise)

Preceding gene: 39995532

Following gene: 39995534

Centisome position: 11.92

GC content: 60.63

Gene sequence:

>795_bases
ATGTTTCCACTGACCACACCATTCCCCACGGCCAACGACGTGGCCTTCTTCACTCTGGTGATGGGAAGGATGGCGGGCAT
CTTCGCAGCCATTCCCATCTTCGGCGGGCGGCGGGTGCCGACCCCCATCAAGGCCTTGCTCGTCTTCGCCATGACCATGG
TCTGCTTCCCCATCATCAAGGAAAAGATGCCGCAGCTTCCGACCGACGTGCTCTCCCTGGGCTTCCTCATGGTGCAGGAG
GTACTGGTCGGCGTGTCGCTTGGGTTGCTGTCCCTGATCATCTTCGCCGCCGTCGAGTTCGCCGGCCAGATCGTCAGCGT
CCAGATCGGCCTCACCATCGTGACCGAATTCGATCCGTCCCAGGGAGGCCAGCTGTCGATCATGTCGATCATCCTGGAGA
TGCTGGCCACGCTCCTGTTCCTCTCCCTGGGCATGCACCACATCTTCATCGGAGCGCTGGTCCAGAGCTATGACGTCCTC
CCCCTGGGGGCGTGGCACATGAGCGGCGCGCTTCTCCAATTCATCGTGACTACCATCGGCGAGGTGTTCGTCCTGGCGGT
CCGGCTCGCGGCGCCGGTGATGGTCACCCTCCTGGCGACCAGCGTCATGCTCGGCATCATGGCCCGCTCGTTCCCCCAGA
TGAACGTCTTTTTCGTCAGTATGCCCCTGAACATCGGCATCGGATTCATTGTTCTGGGGCTTTCCCTCCCTCTCTTCCTC
CATACCGTCCAAGGGCATTTCGGCTTGCTCGACGAACAGCTCAAGACCATGATGAAGCTCATGGGTAAGGGATGA

Upstream 100 bases:

>100_bases
GCGACTTCACCCGGGAAGTTTACGCCCTCATCGCCACCATGCGACGGTGAGGACCGTCAGCTTCGGCGAGTGACAGTGCT
CCGCCGGGACGCCGACACCC

Downstream 100 bases:

>100_bases
GGGCATGTCTGACGACAAACATTCAAAAACAGAAAAACCAACAGCAAAGAAGCTGGACGAGGCGAAAAAGAAAGGGGTTC
CCCACAGTCGGGACCTGACC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MFPLTTPFPTANDVAFFTLVMGRMAGIFAAIPIFGGRRVPTPIKALLVFAMTMVCFPIIKEKMPQLPTDVLSLGFLMVQE
VLVGVSLGLLSLIIFAAVEFAGQIVSVQIGLTIVTEFDPSQGGQLSIMSIILEMLATLLFLSLGMHHIFIGALVQSYDVL
PLGAWHMSGALLQFIVTTIGEVFVLAVRLAAPVMVTLLATSVMLGIMARSFPQMNVFFVSMPLNIGIGFIVLGLSLPLFL
HTVQGHFGLLDEQLKTMMKLMGKG

Sequences:

>Translated_264_residues
MFPLTTPFPTANDVAFFTLVMGRMAGIFAAIPIFGGRRVPTPIKALLVFAMTMVCFPIIKEKMPQLPTDVLSLGFLMVQE
VLVGVSLGLLSLIIFAAVEFAGQIVSVQIGLTIVTEFDPSQGGQLSIMSIILEMLATLLFLSLGMHHIFIGALVQSYDVL
PLGAWHMSGALLQFIVTTIGEVFVLAVRLAAPVMVTLLATSVMLGIMARSFPQMNVFFVSMPLNIGIGFIVLGLSLPLFL
HTVQGHFGLLDEQLKTMMKLMGKG
>Mature_264_residues
MFPLTTPFPTANDVAFFTLVMGRMAGIFAAIPIFGGRRVPTPIKALLVFAMTMVCFPIIKEKMPQLPTDVLSLGFLMVQE
VLVGVSLGLLSLIIFAAVEFAGQIVSVQIGLTIVTEFDPSQGGQLSIMSIILEMLATLLFLSLGMHHIFIGALVQSYDVL
PLGAWHMSGALLQFIVTTIGEVFVLAVRLAAPVMVTLLATSVMLGIMARSFPQMNVFFVSMPLNIGIGFIVLGLSLPLFL
HTVQGHFGLLDEQLKTMMKLMGKG

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=221, Percent_Identity=32.1266968325792, Blast_Score=81, Evalue=9e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28487; Mature: 28487

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
7.2 %Met     (Translated Protein)
7.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
7.2 %Met     (Mature Protein)
7.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]