| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is hypF [H]
Identifier: 39995415
GI number: 39995415
Start: 338376
End: 340667
Strand: Direct
Name: hypF [H]
Synonym: GSU0306
Alternate gene names: 39995415
Gene position: 338376-340667 (Clockwise)
Preceding gene: 39995414
Following gene: 39995416
Centisome position: 8.87
GC content: 64.92
Gene sequence:
>2292_bases GTGGTGCTCAGGCTCAGGATAGCCGTTGAGGGCATTGTCCAGGGCGTCGGGTTCCGCCCCTTCATCTTCAGGCTGGCTGC CCATCACGGTATCGTCGGATGGGTCATGAACAGCGGCGCCGGTGTCGTCATGGAAGCTGAAGGTGATGCCGGCGCCCTCG CTGCCTTTCGCTCCGCCATTGTGAGTGATGCCCCCCCCCTGGCGGTCATTGCCCGAATCGCCATTGAGGAAATTGCACCC CAGGGGGATGGCTCTTTTGTCATCGGCGAGAGCGGCGAGGGAGCGGGTACGGTGCGGGTGGCCCCCGACGGCGATGTCTG TCCAGACTGCCTTCGGGAACTCTTTGACCCGTCGGACCGGCGCTACCGCTATCCGTTCATCAACTGCACCAACTGTGGGC CTCGCTATTCCCTCGTCACTGCTGTCCCCTACGACCGGTCCAATACTACCATGGCGCGCTTTCCCCTGTGCGATGCCTGT CGGTCCGAGTACGAAGATCCGATGGATCGCAGATTCCATGCCCAGCCCGTAGCCTGCCCCGACTGCGGCCCGACGCTGAG GCTGGTGGATGCCTCGGGTGCCGGTCTGCCGGGGGACCCCGTCGACCAAACCGTGGAGCTTCTGACCGAAGGCAAGATCG TCGCGATCAAGGGGCTCGGCGGTTATCACCTGGCGGTGGACGCCGCCAACGACGCCGCCGTGGCGGAACTGCGACGACGC AAGCACCGGGATGAAAAGCCCTTCGCCGTGATGGCGCGGGATATGGAAGCCGTGGCGCGGTTTGCCTTGGTCGACTCCGT GGAGGCGCGGCTTCTGACCGGGCCCGAGCATCCCATAGTGTTGCTGCGCAAACGGCCAAGTACCATCCTCTCCGGTCGAG TGGCCCCTGCCAACGGCTATATCGGGACCATGCTCCCCTATACGCCGCTGCACCACCTGCTGCTCGAGGAGCGGTTCGCT GCTCTCGTCATGACAAGCGGCAACCTGTCGGACGAACCCATTTCCTACCGGGATGATGAGGCGGTTGAGCGGCTTTCGGC GATCGCCGATGCATTTCTGGTCCACGACCGGGAGATTCGGACCCGCATCGATGATTCCGTCATCCGGGTATTCAGGGGAA GCCCCCTCTTTTTGCGCCGCTCCCGCGGCTATGTTCCCCGCGAGGTACGGTTGCCCGTGGAGATTCCGCCCGTTCTTGCC GTAGGCGCCGAGCTCAAGGGCGCCCTGTGCCTCACTCGGGGAGACCGGGCGTTCCCGAGCCAGCACATCGGTGACCTCAA GAACGACACAACCCTGACGTCTCTGGCGGCAACGGCGGAACACCTGCAGGCGCTCCTGGAGATCAGGCCCCAGTTGGTGG CCCACGACCTCCATCCCGACTATCTTTCCACGGGCTACGCCGAGGGGATTGCCGGGCTCCCCCGGGTGGCGGTCCAGCAT CATCACGCTCATCTCGCCTCTTGTATGGCCGACAACGGTCTTGACGGCAGCGTCATCGGCGTCATCTTCGACGGCACCGG CCTCGGGACCGACGGGACCGTCTGGGGGGGCGAGTTCCTCGTGGGCGGATATGACGGATTCCGCCGGGCCGCCCACTTCC GGCAGGTACCCCTGCCGGGTGGAGACGCGGCTGTGAGGGAGCCGTATCGCATGGCGCTCGCTTACCTGCACGATGCCTTT GGTGCCGATTTCTTTGAGCAGCCGGTCCCCTGGCTGACCGAGGTAGGGGATGAGGATCGCTCGCTGTTTCTGCGCATGCT GGAGCGCCGGATAAACTCTCCCCTGACCTCCAGCTGTGGCAGGCTCTTCGATGCCGTGGCCGCCATGGTGGGGCTGCGGC GCACGGTGAGCTACGAGGGGCAGGCGGCCATCGAGCTGGAAGGGCAGGCGGAAGAGTCCGCCACGGGACGGGCCTATCCC TTTGCCGTGCTGAGTCGGCAGGGTGCCATCGAAGTGGACTACCGGCTCATGATCCGGGCACTGATGGAGGATCTTGCCGT GCAGGTCTCCCTCCCGGAGATGGCCCGGGCGTTCCACAACACGGTTGCGGCCTCTGTTGTCGACGTCTGCCGCAAGGTAC GGAGCGAGACCGGCCTCGACCGGATCGTCCTCTCGGGAGGAGTCTTTCAGAACCGGCTCCTCTGCGAGGAGTCGTGCCGG CTGCTTGAGGCAGAAGGGTTCCGGGTGTTTACCCACCGTCTCGTTCCTCCCAATGACGGAGGCGTGGCGCTGGGACAGGC CGTGATTGCAGGGGTGGCCCACCGTGTCCCCCGGAGTGATAAAGGAGAATAA
Upstream 100 bases:
>100_bases CTTTCAGGTTTCGAGCCGGACCGGCGAGGGGATGGATGCTTGGTATGCATGGCTGGCCGACCGCATTGCGGCGGTGAAGG GGTAGGTCGGGAATTCGGCC
Downstream 100 bases:
>100_bases CTAACCATGTGTCTTGGTGTGCCCATGCAGGTCGTCGCTGTCGGTGAGGGTGAGGTTGTGGCGGAAATAGACGGCGTCAG GAAAGAAGCCAGCCTCATGC
Product: hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF2; [NiFe]-hydrogenase maturation factor hypF2; Hydrogenase maturation protein hypF2 [H]
Number of amino acids: Translated: 763; Mature: 763
Protein sequence:
>763_residues MVLRLRIAVEGIVQGVGFRPFIFRLAAHHGIVGWVMNSGAGVVMEAEGDAGALAAFRSAIVSDAPPLAVIARIAIEEIAP QGDGSFVIGESGEGAGTVRVAPDGDVCPDCLRELFDPSDRRYRYPFINCTNCGPRYSLVTAVPYDRSNTTMARFPLCDAC RSEYEDPMDRRFHAQPVACPDCGPTLRLVDASGAGLPGDPVDQTVELLTEGKIVAIKGLGGYHLAVDAANDAAVAELRRR KHRDEKPFAVMARDMEAVARFALVDSVEARLLTGPEHPIVLLRKRPSTILSGRVAPANGYIGTMLPYTPLHHLLLEERFA ALVMTSGNLSDEPISYRDDEAVERLSAIADAFLVHDREIRTRIDDSVIRVFRGSPLFLRRSRGYVPREVRLPVEIPPVLA VGAELKGALCLTRGDRAFPSQHIGDLKNDTTLTSLAATAEHLQALLEIRPQLVAHDLHPDYLSTGYAEGIAGLPRVAVQH HHAHLASCMADNGLDGSVIGVIFDGTGLGTDGTVWGGEFLVGGYDGFRRAAHFRQVPLPGGDAAVREPYRMALAYLHDAF GADFFEQPVPWLTEVGDEDRSLFLRMLERRINSPLTSSCGRLFDAVAAMVGLRRTVSYEGQAAIELEGQAEESATGRAYP FAVLSRQGAIEVDYRLMIRALMEDLAVQVSLPEMARAFHNTVAASVVDVCRKVRSETGLDRIVLSGGVFQNRLLCEESCR LLEAEGFRVFTHRLVPPNDGGVALGQAVIAGVAHRVPRSDKGE
Sequences:
>Translated_763_residues MVLRLRIAVEGIVQGVGFRPFIFRLAAHHGIVGWVMNSGAGVVMEAEGDAGALAAFRSAIVSDAPPLAVIARIAIEEIAP QGDGSFVIGESGEGAGTVRVAPDGDVCPDCLRELFDPSDRRYRYPFINCTNCGPRYSLVTAVPYDRSNTTMARFPLCDAC RSEYEDPMDRRFHAQPVACPDCGPTLRLVDASGAGLPGDPVDQTVELLTEGKIVAIKGLGGYHLAVDAANDAAVAELRRR KHRDEKPFAVMARDMEAVARFALVDSVEARLLTGPEHPIVLLRKRPSTILSGRVAPANGYIGTMLPYTPLHHLLLEERFA ALVMTSGNLSDEPISYRDDEAVERLSAIADAFLVHDREIRTRIDDSVIRVFRGSPLFLRRSRGYVPREVRLPVEIPPVLA VGAELKGALCLTRGDRAFPSQHIGDLKNDTTLTSLAATAEHLQALLEIRPQLVAHDLHPDYLSTGYAEGIAGLPRVAVQH HHAHLASCMADNGLDGSVIGVIFDGTGLGTDGTVWGGEFLVGGYDGFRRAAHFRQVPLPGGDAAVREPYRMALAYLHDAF GADFFEQPVPWLTEVGDEDRSLFLRMLERRINSPLTSSCGRLFDAVAAMVGLRRTVSYEGQAAIELEGQAEESATGRAYP FAVLSRQGAIEVDYRLMIRALMEDLAVQVSLPEMARAFHNTVAASVVDVCRKVRSETGLDRIVLSGGVFQNRLLCEESCR LLEAEGFRVFTHRLVPPNDGGVALGQAVIAGVAHRVPRSDKGE >Mature_763_residues MVLRLRIAVEGIVQGVGFRPFIFRLAAHHGIVGWVMNSGAGVVMEAEGDAGALAAFRSAIVSDAPPLAVIARIAIEEIAP QGDGSFVIGESGEGAGTVRVAPDGDVCPDCLRELFDPSDRRYRYPFINCTNCGPRYSLVTAVPYDRSNTTMARFPLCDAC RSEYEDPMDRRFHAQPVACPDCGPTLRLVDASGAGLPGDPVDQTVELLTEGKIVAIKGLGGYHLAVDAANDAAVAELRRR KHRDEKPFAVMARDMEAVARFALVDSVEARLLTGPEHPIVLLRKRPSTILSGRVAPANGYIGTMLPYTPLHHLLLEERFA ALVMTSGNLSDEPISYRDDEAVERLSAIADAFLVHDREIRTRIDDSVIRVFRGSPLFLRRSRGYVPREVRLPVEIPPVLA VGAELKGALCLTRGDRAFPSQHIGDLKNDTTLTSLAATAEHLQALLEIRPQLVAHDLHPDYLSTGYAEGIAGLPRVAVQH HHAHLASCMADNGLDGSVIGVIFDGTGLGTDGTVWGGEFLVGGYDGFRRAAHFRQVPLPGGDAAVREPYRMALAYLHDAF GADFFEQPVPWLTEVGDEDRSLFLRMLERRINSPLTSSCGRLFDAVAAMVGLRRTVSYEGQAAIELEGQAEESATGRAYP FAVLSRQGAIEVDYRLMIRALMEDLAVQVSLPEMARAFHNTVAASVVDVCRKVRSETGLDRIVLSGGVFQNRLLCEESCR LLEAEGFRVFTHRLVPPNDGGVALGQAVIAGVAHRVPRSDKGE
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=758, Percent_Identity=42.4802110817942, Blast_Score=485, Evalue=1e-138,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 82767; Mature: 82767
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLRLRIAVEGIVQGVGFRPFIFRLAAHHGIVGWVMNSGAGVVMEAEGDAGALAAFRSAI CEEEEEEHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCHHHHHHHHHH VSDAPPLAVIARIAIEEIAPQGDGSFVIGESGEGAGTVRVAPDGDVCPDCLRELFDPSDR HCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCCCHHHHHHHCCCCCC RYRYPFINCTNCGPRYSLVTAVPYDRSNTTMARFPLCDACRSEYEDPMDRRFHAQPVACP EEECCEEEECCCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHCCCCHHHCCCCCCCCCC DCGPTLRLVDASGAGLPGDPVDQTVELLTEGKIVAIKGLGGYHLAVDAANDAAVAELRRR CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCEEEEEECCCCHHHHHHHHH KHRDEKPFAVMARDMEAVARFALVDSVEARLLTGPEHPIVLLRKRPSTILSGRVAPANGY HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCHHHCCCCCCCCCC IGTMLPYTPLHHLLLEERFAALVMTSGNLSDEPISYRDDEAVERLSAIADAFLVHDREIR EECCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH TRIDDSVIRVFRGSPLFLRRSRGYVPREVRLPVEIPPVLAVGAELKGALCLTRGDRAFPS HHHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCCCHHEECCCCCCEEEEECCCCCCCH QHIGDLKNDTTLTSLAATAEHLQALLEIRPQLVAHDLHPDYLSTGYAEGIAGLPRVAVQH HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHCCCCHHHHHH HHAHLASCMADNGLDGSVIGVIFDGTGLGTDGTVWGGEFLVGGYDGFRRAAHFRQVPLPG HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEECCEEEEECCHHHHHHHHHCCCCCCC GDAAVREPYRMALAYLHDAFGADFFEQPVPWLTEVGDEDRSLFLRMLERRINSPLTSSCG CCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH RLFDAVAAMVGLRRTVSYEGQAAIELEGQAEESATGRAYPFAVLSRQGAIEVDYRLMIRA HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEHHHHHHHHH LMEDLAVQVSLPEMARAFHNTVAASVVDVCRKVRSETGLDRIVLSGGVFQNRLLCEESCR HHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH LLEAEGFRVFTHRLVPPNDGGVALGQAVIAGVAHRVPRSDKGE EECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MVLRLRIAVEGIVQGVGFRPFIFRLAAHHGIVGWVMNSGAGVVMEAEGDAGALAAFRSAI CEEEEEEHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCHHHHHHHHHH VSDAPPLAVIARIAIEEIAPQGDGSFVIGESGEGAGTVRVAPDGDVCPDCLRELFDPSDR HCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEECCCCCCCHHHHHHHCCCCCC RYRYPFINCTNCGPRYSLVTAVPYDRSNTTMARFPLCDACRSEYEDPMDRRFHAQPVACP EEECCEEEECCCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHCCCCHHHCCCCCCCCCC DCGPTLRLVDASGAGLPGDPVDQTVELLTEGKIVAIKGLGGYHLAVDAANDAAVAELRRR CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCEEEEEECCCCHHHHHHHHH KHRDEKPFAVMARDMEAVARFALVDSVEARLLTGPEHPIVLLRKRPSTILSGRVAPANGY HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCHHHCCCCCCCCCC IGTMLPYTPLHHLLLEERFAALVMTSGNLSDEPISYRDDEAVERLSAIADAFLVHDREIR EECCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH TRIDDSVIRVFRGSPLFLRRSRGYVPREVRLPVEIPPVLAVGAELKGALCLTRGDRAFPS HHHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCCCHHEECCCCCCEEEEECCCCCCCH QHIGDLKNDTTLTSLAATAEHLQALLEIRPQLVAHDLHPDYLSTGYAEGIAGLPRVAVQH HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHCCCCHHHHHH HHAHLASCMADNGLDGSVIGVIFDGTGLGTDGTVWGGEFLVGGYDGFRRAAHFRQVPLPG HHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEECCEEEEECCHHHHHHHHHCCCCCCC GDAAVREPYRMALAYLHDAFGADFFEQPVPWLTEVGDEDRSLFLRMLERRINSPLTSSCG CCHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH RLFDAVAAMVGLRRTVSYEGQAAIELEGQAEESATGRAYPFAVLSRQGAIEVDYRLMIRA HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEHHHHHHHHH LMEDLAVQVSLPEMARAFHNTVAASVVDVCRKVRSETGLDRIVLSGGVFQNRLLCEESCR HHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH LLEAEGFRVFTHRLVPPNDGGVALGQAVIAGVAHRVPRSDKGE EECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9799289; 12948488 [H]