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The map label for this gene is ycdC [C]

Identifier: 39995286

GI number: 39995286

Start: 191349

End: 191960

Strand: Direct

Name: ycdC [C]

Synonym: GSU0175

Alternate gene names: 39995286

Gene position: 191349-191960 (Clockwise)

Preceding gene: 39995284

Following gene: 39995287

Centisome position: 5.02

GC content: 66.83

Gene sequence:

>612_bases
ATGACCAGAGCGGACTGTCGCAGCAGGCTGATGGAGGTGGCAACGGAGCTCTTCGCCCAGAAGGGGTTCTACGGCGTCAG
CATCCGGGAGCTCGCCCAGGCCGCCGGCGCCAGCATCTCAATGATCTCCTACCACTTCGGCGGCAAGGAGGGGCTCTACG
CGGCGGTGCTCCAGGAGCAGTTCGCCTGCTTCGGCCAGTTGGACGACATCCGGGGCCAGGCGGGGGATCCCCTGGCGGTC
ATGACAGCCTACCTCCGCTGGACCATCCAGCGCCACCGGAACAACCCCCAGCTCCTCCGCTTCTACACCAGTGAACTCAC
CAACCCAACCCCCTGCTTCGCTGCAATCGTTTCCCCCGCCATCGCCTCCGTGATCCGCCTGCTGGCGGAGAGCATCGAGG
CGGGGATGACGCGCGGCCTCTTCCGCCGGGATCTCCACGCCGTGAACAGCGCCCTGGCCCTGGCGGGTATGGTCAACTAC
TTCTTCCTCAGCACCCTGGCCACGGAGGGGCTCACCAGCCACTCGCCGGACCAGGACGAGGAACTGATCCGCCAGTACGT
TGCCATCTTTACCCGGGGGATCATGGCCGACGGCGGGGCCGCGCCGGCATAG

Upstream 100 bases:

>100_bases
ACAATATTCGGTAAACAGTATGTGTAGTGGGATTGGATTTGGCTTTCGGCGGCGGCTTTGATACTCTTTGTCACTGACAA
CGTAAGGGGGGCGGAACGGG

Downstream 100 bases:

>100_bases
GCCCGCAGCCGTCACCTCCGTGCCATCCGGCATCCGGTGGTCAGAGCGCCGCGGTCTCCGCATTCGGGCTTGTAATATCG
AAGCAAACTGGGCCACAATG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MTRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDPLAV
MTAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNY
FFLSTLATEGLTSHSPDQDEELIRQYVAIFTRGIMADGGAAPA

Sequences:

>Translated_203_residues
MTRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDPLAV
MTAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNY
FFLSTLATEGLTSHSPDQDEELIRQYVAIFTRGIMADGGAAPA
>Mature_202_residues
TRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDPLAVM
TAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNYF
FLSTLATEGLTSHSPDQDEELIRQYVAIFTRGIMADGGAAPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22160; Mature: 22028

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQ
CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH
FACFGQLDDIRGQAGDPLAVMTAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPA
HHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
IASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNYFFLSTLATEGLTSHSPDQDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ELIRQYVAIFTRGIMADGGAAPA
HHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQ
CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH
FACFGQLDDIRGQAGDPLAVMTAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPA
HHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHH
IASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNYFFLSTLATEGLTSHSPDQDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
ELIRQYVAIFTRGIMADGGAAPA
HHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA