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The map label for this gene is dapL [H]

Identifier: 39995273

GI number: 39995273

Start: 179342

End: 180574

Strand: Direct

Name: dapL [H]

Synonym: GSU0162

Alternate gene names: 39995273

Gene position: 179342-180574 (Clockwise)

Preceding gene: 39995272

Following gene: 39995274

Centisome position: 4.7

GC content: 62.77

Gene sequence:

>1233_bases
ATGGCAAAGATCAATGACCACTATCTGAAACTCAAGGCCGGCTACCTCTTCCCGGAGATCGGCCGCCGCGTGCGGGAGTT
CGCCGCCGCCAACCCGAGCGCCAAGGTGATCCGCCTCGGCATCGGCGATGTCACCCGGCCCCTGGCCCCGGCCGTGATCA
AGGCGTTCCACGAGGCCGTGGACGACCTGGCCACCACCGAGAATTTCGCCGGGTACGGCCCGGAGCAGGGGTATGACTGG
CTGATCAACGCCATTATCGAAAAGTCCTACAAGCCCCTGGGCGTGGACCTCAAGACCGAGGAGATGTTCATCTCCGACGG
CTCCAAGTGCGACTGCGCCAACATCCTGGACATCTTCGCCCTCGACAACGTCGTGGCCATCGGCGACCCGGTCTACCCGG
TCTACAACGACACCAACGTCATGATCGGCCGCACCGGCGAGGCCGACGACAAGGGCTACTACAAGGGCATCGTCTACATG
CCCTGCACCGAGGAGAACGGCTTCATTCCGTCCCTCCCCACCGAGAAGGTGGACATCATCTATCTCTGCTTCCCCAACAA
CCCCACCGGCACCGTGGCCACCAAGGCCGAGCTGAAGAAGTGGGTCGACTACGCCATCGCCAACGACGCCGTCATCTTCT
TCGACGCCGCCTACGAGGCCTTCATCACCGATCCCGCAATCCCCCACTCCATCTACGAGATCGAAGGGGCCAAGAAGTGC
GCCATCGAATTCCGCTCCTTCTCCAAGACTGCCGGCTTCACCGGCGTCCGCTGCGGCCTGGTGGTCGTGCCGGAAGAGGT
CATGGGCACCACGCCGACGGGCGAGAAGTACAGCTTCAACAAGCTCTGGCTGCGCCGCACCACCACCAAGTTCAACGGCG
CCTCCTACCCGGTGCAGAAGGCCGCCGCCGCAGTCTACTCCGACGAGGGGTGGCAGCAGAACAAAGAGATCATCGACTAC
TACATGGAGAATGCCCGGATCATTCGCGAGGGCCTGGCCGCCGCCGGCCTCACCGTCTACGGCGGGGTCAATGCCCCCTA
CATCTGGCTCAAGACCCCCGGCGGCATGAGCAGTTGGGACTTCTTCGACAAGCTGCTGAACGAGTGCAACGTGGTCGGAA
CGCCGGGGAGCGGATTCGGCCCCAGCGGCGAAGGGTTCTTCCGGCTGTCGGCCTTCGGCCATCGCGAGAATGTGATCGAG
GCGGTGGAGAGGATAAAGAAGAATTTGAAGTAG

Upstream 100 bases:

>100_bases
CAATCAACCTTTTTCAGGTTGAAGCGAACGCCATACATCCGAATTGCCGCTTTGAGCGGCATTTCCTTTATCCAATACGA
AACCGGAGGATTCATCGACG

Downstream 100 bases:

>100_bases
ATTAAAGAAGGGCGGCCGATGAGGTCGCCCTTTCTTTATTTATCTTCTTGCCGGTGAGATTCCCCTGTTGACGCGGATGT
GAATTGTGTTATCTAATAAC

Product: L,L-diaminopimelate aminotransferase

Products: NA

Alternate protein names: DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase [H]

Number of amino acids: Translated: 410; Mature: 409

Protein sequence:

>410_residues
MAKINDHYLKLKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAVDDLATTENFAGYGPEQGYDW
LINAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFALDNVVAIGDPVYPVYNDTNVMIGRTGEADDKGYYKGIVYM
PCTEENGFIPSLPTEKVDIIYLCFPNNPTGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKC
AIEFRSFSKTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQKAAAAVYSDEGWQQNKEIIDY
YMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWDFFDKLLNECNVVGTPGSGFGPSGEGFFRLSAFGHRENVIE
AVERIKKNLK

Sequences:

>Translated_410_residues
MAKINDHYLKLKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAVDDLATTENFAGYGPEQGYDW
LINAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFALDNVVAIGDPVYPVYNDTNVMIGRTGEADDKGYYKGIVYM
PCTEENGFIPSLPTEKVDIIYLCFPNNPTGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKC
AIEFRSFSKTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQKAAAAVYSDEGWQQNKEIIDY
YMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWDFFDKLLNECNVVGTPGSGFGPSGEGFFRLSAFGHRENVIE
AVERIKKNLK
>Mature_409_residues
AKINDHYLKLKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAVDDLATTENFAGYGPEQGYDWL
INAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFALDNVVAIGDPVYPVYNDTNVMIGRTGEADDKGYYKGIVYMP
CTEENGFIPSLPTEKVDIIYLCFPNNPTGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKCA
IEFRSFSKTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQKAAAAVYSDEGWQQNKEIIDYY
MENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWDFFDKLLNECNVVGTPGSGFGPSGEGFFRLSAFGHRENVIEA
VERIKKNLK

Specific function: Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788722, Length=392, Percent_Identity=26.7857142857143, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR019942
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.83 [H]

Molecular weight: Translated: 45200; Mature: 45069

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKINDHYLKLKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAV
CCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
DDLATTENFAGYGPEQGYDWLINAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFA
HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCEEEECCCCCCCHHHHHHHHH
LDNVVAIGDPVYPVYNDTNVMIGRTGEADDKGYYKGIVYMPCTEENGFIPSLPTEKVDII
HCCEEEECCCCCEEECCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEE
YLCFPNNPTGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKC
EEEECCCCCCCEEEHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCEEEECCCHHH
AIEFRSFSKTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQK
HHHHHHHHCCCCCCCEEEEEEEECHHHHCCCCCCCCEECCEEEEEEECCCCCCCCCCHHH
AAAAVYSDEGWQQNKEIIDYYMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWD
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCCCHHH
FFDKLLNECNVVGTPGSGFGPSGEGFFRLSAFGHRENVIEAVERIKKNLK
HHHHHHHHCEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKINDHYLKLKAGYLFPEIGRRVREFAAANPSAKVIRLGIGDVTRPLAPAVIKAFHEAV
CCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
DDLATTENFAGYGPEQGYDWLINAIIEKSYKPLGVDLKTEEMFISDGSKCDCANILDIFA
HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECCEEEECCCCCCCHHHHHHHHH
LDNVVAIGDPVYPVYNDTNVMIGRTGEADDKGYYKGIVYMPCTEENGFIPSLPTEKVDII
HCCEEEECCCCCEEECCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEE
YLCFPNNPTGTVATKAELKKWVDYAIANDAVIFFDAAYEAFITDPAIPHSIYEIEGAKKC
EEEECCCCCCCEEEHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCEEEECCCHHH
AIEFRSFSKTAGFTGVRCGLVVVPEEVMGTTPTGEKYSFNKLWLRRTTTKFNGASYPVQK
HHHHHHHHCCCCCCCEEEEEEEECHHHHCCCCCCCCEECCEEEEEEECCCCCCCCCCHHH
AAAAVYSDEGWQQNKEIIDYYMENARIIREGLAAAGLTVYGGVNAPYIWLKTPGGMSSWD
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCCCHHH
FFDKLLNECNVVGTPGSGFGPSGEGFFRLSAFGHRENVIEAVERIKKNLK
HHHHHHHHCEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA