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The map label for this gene is ylmD [H]

Identifier: 39995194

GI number: 39995194

Start: 94685

End: 95485

Strand: Direct

Name: ylmD [H]

Synonym: GSU0083

Alternate gene names: 39995194

Gene position: 94685-95485 (Clockwise)

Preceding gene: 39995193

Following gene: 39995195

Centisome position: 2.48

GC content: 64.92

Gene sequence:

>801_bases
ATGGAGATGAAACGAGCCGACAAGGTTCATTACGTGGAACCGTCCTTGCTGGCCGCCGCAGGTGTGGCGGTGCAGGGATT
CACCACCCGCCACGAAGGGGTGTCGCGCACCCCCTACAATTCCCTCAACCTGGGTACCGGTACCGCGGACGCCTCCCACA
GCGTTGAGGGGAACCGCAGCATCCTGGCCCGGGCATTCGGCGGCACCGTGGAGCGCCTGGTGACCGTCACCCAGGTCCAT
GGGACCGACCTGTTGGTCATTGATGCGCCGAACCCCGATTACGGCTACTTCCAACGGCTGGAAGCCGATGGGATCATCAC
TAACCAGCCCGGCGTGATGATCGGCGTCTGCGTTGCCGACTGCGTGCCGGTGCTCCTGCTGGACCCGGTGAAGGGCGTTG
CTGCGGCGCTCCACGCAGGATGGAAGGGAACCGCATCGGGCATCTGCCGCAAGGGGGTGGACGCCTTTGTCTCGGTTTTC
GGCTCCGATCCCCGGGATATCCTGGCGGCCGTGGGGCCGGCCATCGGTCCCTGCTGCTACGAGGTGGATACCCCCGTTTT
CCAGGCGTTTCGCCAGGCGGGCTGCGAGTGGGATGAGGTCGCAACCCTCAGCGGCGTGGCCCGGTGGCATCTGGACCTGG
CGCGGGCCAACGCGCGGCAGCTGGCAGCCTCGGGTATTGCGGAGCGGAATATCGAGACGAGCGGCCAGTGTGTCTGCTGT
TCGCCGGAGCAGTTCTTCTCCTACCGTCGCGACAAGGGAGATACCGGTCGACAGATGGGATTCATCATGCTGAAAGGATA
G

Upstream 100 bases:

>100_bases
TTGTCCACCCGGTCACGGGGGAATACCTGGAGTTCGACACTGAGCTGCCCGAGGATATGGCGCGGATTATCGATTATCTG
GAACGACAAGGAGCCTGATC

Downstream 100 bases:

>100_bases
GGCGGGGGCGCCGATGAAGTTTCCCATTTCCGATCAGATCCGGTCAGTCCAGTGCGCGCCCATCGCCGAGGTTAAGAGCT
GGCTCGCTCACCGGGAGCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MEMKRADKVHYVEPSLLAAAGVAVQGFTTRHEGVSRTPYNSLNLGTGTADASHSVEGNRSILARAFGGTVERLVTVTQVH
GTDLLVIDAPNPDYGYFQRLEADGIITNQPGVMIGVCVADCVPVLLLDPVKGVAAALHAGWKGTASGICRKGVDAFVSVF
GSDPRDILAAVGPAIGPCCYEVDTPVFQAFRQAGCEWDEVATLSGVARWHLDLARANARQLAASGIAERNIETSGQCVCC
SPEQFFSYRRDKGDTGRQMGFIMLKG

Sequences:

>Translated_266_residues
MEMKRADKVHYVEPSLLAAAGVAVQGFTTRHEGVSRTPYNSLNLGTGTADASHSVEGNRSILARAFGGTVERLVTVTQVH
GTDLLVIDAPNPDYGYFQRLEADGIITNQPGVMIGVCVADCVPVLLLDPVKGVAAALHAGWKGTASGICRKGVDAFVSVF
GSDPRDILAAVGPAIGPCCYEVDTPVFQAFRQAGCEWDEVATLSGVARWHLDLARANARQLAASGIAERNIETSGQCVCC
SPEQFFSYRRDKGDTGRQMGFIMLKG
>Mature_266_residues
MEMKRADKVHYVEPSLLAAAGVAVQGFTTRHEGVSRTPYNSLNLGTGTADASHSVEGNRSILARAFGGTVERLVTVTQVH
GTDLLVIDAPNPDYGYFQRLEADGIITNQPGVMIGVCVADCVPVLLLDPVKGVAAALHAGWKGTASGICRKGVDAFVSVF
GSDPRDILAAVGPAIGPCCYEVDTPVFQAFRQAGCEWDEVATLSGVARWHLDLARANARQLAASGIAERNIETSGQCVCC
SPEQFFSYRRDKGDTGRQMGFIMLKG

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=251, Percent_Identity=33.0677290836653, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI190194372, Length=251, Percent_Identity=33.0677290836653, Blast_Score=135, Evalue=3e-32,
Organism=Escherichia coli, GI1788945, Length=240, Percent_Identity=37.9166666666667, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 28288; Mature: 28288

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMKRADKVHYVEPSLLAAAGVAVQGFTTRHEGVSRTPYNSLNLGTGTADASHSVEGNRS
CCCCCCCCEEEECHHHHHHHCHHEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
ILARAFGGTVERLVTVTQVHGTDLLVIDAPNPDYGYFQRLEADGIITNQPGVMIGVCVAD
HHHHHHCHHHHHHHHHEEECCCEEEEEECCCCCHHHHHHCCCCCEEECCCCCEEEEHHHH
CVPVLLLDPVKGVAAALHAGWKGTASGICRKGVDAFVSVFGSDPRDILAAVGPAIGPCCY
HHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEE
EVDTPVFQAFRQAGCEWDEVATLSGVARWHLDLARANARQLAASGIAERNIETSGQCVCC
ECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
SPEQFFSYRRDKGDTGRQMGFIMLKG
CHHHHHHHHCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MEMKRADKVHYVEPSLLAAAGVAVQGFTTRHEGVSRTPYNSLNLGTGTADASHSVEGNRS
CCCCCCCCEEEECHHHHHHHCHHEECCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
ILARAFGGTVERLVTVTQVHGTDLLVIDAPNPDYGYFQRLEADGIITNQPGVMIGVCVAD
HHHHHHCHHHHHHHHHEEECCCEEEEEECCCCCHHHHHHCCCCCEEECCCCCEEEEHHHH
CVPVLLLDPVKGVAAALHAGWKGTASGICRKGVDAFVSVFGSDPRDILAAVGPAIGPCCY
HHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEE
EVDTPVFQAFRQAGCEWDEVATLSGVARWHLDLARANARQLAASGIAERNIETSGQCVCC
ECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
SPEQFFSYRRDKGDTGRQMGFIMLKG
CHHHHHHHHCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]