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The map label for this gene is yrdA [H]

Identifier: 39995131

GI number: 39995131

Start: 31533

End: 32072

Strand: Reverse

Name: yrdA [H]

Synonym: GSU0020

Alternate gene names: 39995131

Gene position: 32072-31533 (Counterclockwise)

Preceding gene: 39995132

Following gene: 39995129

Centisome position: 0.84

GC content: 61.67

Gene sequence:

>540_bases
ATGATTCGCCCCTTCAAGGGAATGAGCCCGCAAATCGATCCGTCCGCGTTCATTGCCGACACCGCCGTTGTCATCGGCGA
CGTGACCATCGGCCCCGAAAGCAGTATCTGGTACAACGTGGTTGCCCGAGGCGATGTCAATTTCATCCGCATCGGCGCCC
GGAGCAACATCCAGGATCTCTCCATGCTCCATGTGACCCATAAAAAGCACGCCGACGACCCGGGAGCCCCCCTTGTCATC
GGCGATGACGTGACCGTCGGCCACAGCGTGACCCTCCACGGCTGCACCATCGGCAATGGTGCCTTCATCGGCATGCAGGC
AATGGTCATGGACAAGGCGGTGGTGGGCGAAGGAGCACTCGTAGGCGCACGGGCACTGGTGACCGAGGGAACCGTCATCC
CGCCCCATACCCTCTGGGTTGGGGCACCGGCAAAGTACAAGCGCGACCTGACCCCCGACGAAATTGCCTGGCTGAAGCGC
TCGGCAGGCAACTACGTGCGCTACTCACGGGAATATCTTGAGGAAGACGCGGACCGCTGA

Upstream 100 bases:

>100_bases
CCCCGAAGAAATCCGGGTCCCGGCCAAGCTCGCCCTGGACCGGATGATCGCCATCCCCCGGGACTGACACCGGACCTACC
ATAACAGCCAGAGGTATCCC

Downstream 100 bases:

>100_bases
AACTAAACGGAGCCGGCCCTTTGGGGACCAGCTCCGTTTAGTTTTCCGACATGGTCAGCGGGGCGATCTCAGAAATTCAG
AAGCAGAATACGTCCCTTTT

Product: hexapeptide transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MIRPFKGMSPQIDPSAFIADTAVVIGDVTIGPESSIWYNVVARGDVNFIRIGARSNIQDLSMLHVTHKKHADDPGAPLVI
GDDVTVGHSVTLHGCTIGNGAFIGMQAMVMDKAVVGEGALVGARALVTEGTVIPPHTLWVGAPAKYKRDLTPDEIAWLKR
SAGNYVRYSREYLEEDADR

Sequences:

>Translated_179_residues
MIRPFKGMSPQIDPSAFIADTAVVIGDVTIGPESSIWYNVVARGDVNFIRIGARSNIQDLSMLHVTHKKHADDPGAPLVI
GDDVTVGHSVTLHGCTIGNGAFIGMQAMVMDKAVVGEGALVGARALVTEGTVIPPHTLWVGAPAKYKRDLTPDEIAWLKR
SAGNYVRYSREYLEEDADR
>Mature_179_residues
MIRPFKGMSPQIDPSAFIADTAVVIGDVTIGPESSIWYNVVARGDVNFIRIGARSNIQDLSMLHVTHKKHADDPGAPLVI
GDDVTVGHSVTLHGCTIGNGAFIGMQAMVMDKAVVGEGALVGARALVTEGTVIPPHTLWVGAPAKYKRDLTPDEIAWLKR
SAGNYVRYSREYLEEDADR

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=175, Percent_Identity=47.4285714285714, Blast_Score=171, Evalue=3e-44,
Organism=Escherichia coli, GI1787667, Length=164, Percent_Identity=39.0243902439024, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI87081681, Length=161, Percent_Identity=34.1614906832298, Blast_Score=100, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19295; Mature: 19295

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRPFKGMSPQIDPSAFIADTAVVIGDVTIGPESSIWYNVVARGDVNFIRIGARSNIQDL
CCCCCCCCCCCCCCCCEEECCEEEEEEEEECCCCCEEEEEEEECCCCEEEECCCCCCCHH
SMLHVTHKKHADDPGAPLVIGDDVTVGHSVTLHGCTIGNGAFIGMQAMVMDKAVVGEGAL
HHEEEHHHHCCCCCCCCEEEECCEEECCEEEEEEEEECCCEEEHHHHHHHHHHHCCCCCE
VGARALVTEGTVIPPHTLWVGAPAKYKRDLTPDEIAWLKRSAGNYVRYSREYLEEDADR
ECCEEEEECCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIRPFKGMSPQIDPSAFIADTAVVIGDVTIGPESSIWYNVVARGDVNFIRIGARSNIQDL
CCCCCCCCCCCCCCCCEEECCEEEEEEEEECCCCCEEEEEEEECCCCEEEECCCCCCCHH
SMLHVTHKKHADDPGAPLVIGDDVTVGHSVTLHGCTIGNGAFIGMQAMVMDKAVVGEGAL
HHEEEHHHHCCCCCCCCEEEECCEEECCEEEEEEEEECCCEEEHHHHHHHHHHHCCCCCE
VGARALVTEGTVIPPHTLWVGAPAKYKRDLTPDEIAWLKRSAGNYVRYSREYLEEDADR
ECCEEEEECCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]