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The map label for this gene is yjiR [H]

Identifier: 39995129

GI number: 39995129

Start: 28904

End: 30340

Strand: Reverse

Name: yjiR [H]

Synonym: GSU0018

Alternate gene names: 39995129

Gene position: 30340-28904 (Counterclockwise)

Preceding gene: 39995131

Following gene: 39995128

Centisome position: 0.8

GC content: 65.62

Gene sequence:

>1437_bases
ATGAACACGGTGAAAAGCGGAGGCAAAATCCCTCTCTACGAATCGGTGGCCGGCCGCGTGGCCCAACTCATCGGCGAGGG
AACATTCCGGGCAGGGGACCGGATTCCGTCGGTCAGGGCACTGGGGCGGCAATTCCAGGTGAGCCTCACCACGGTGATGG
AGGCCTACACCCTCCTCGAGGATCGAGGACTCATCGAGGCGCGCCCCCAATCAGGGTACTACGTGAGAGCCCGCTTCCCC
GGCTCGACAGCCGAGCCGGAAATGACGGCGCCGCCCCTGAAACCTACAACCGTCGGCACGGCGGAACTCTCCATGATGGT
AATGCGGGATACCCGCAACCCGGACCTCGTCCCGCTGGGCGCCGCCATTCCCAATCCCGAGCTGCTGCCGGTGGACCGGT
TGAACCGGATGCTCGCCACCGAGAGCCGGAAACATGCCGTGGCCAGCGTCTCCTACGATATGCCACCCGGCTGCGAGCGG
CTGCGGGTCCAGATCGCCCGGCGGATGCTGGCCGTGGGGTGCGCCTTGGCGCCGGACCAGATCGTGACCACCTCCGGCTG
TATCGAGGCGGTAGTCCTGTCGCTGCGGGCCATCTGCCGTCCCGGGGATACGGTGGCAGTGGAATCGCCGGTGTACTACA
ACTTCCTGCAGGCGATCGACCTGATGGGGCTCAAGGCCCTGGAGATCCCCACCCATCCGCGCACGGGGATCAGCCTCGAC
GCCCTGCGCTACGCCCTTGATCACACCCCGATCCGGGCCTGCCTGGTGGTCGCCAACTTCAACAATCCCCTGGGAAGCCT
CATGCCCGACGACCACAAGCGCGAACTGGTGGCAATGCTGGCGGCCCGCCGGATTCCCCTCATCGAGGACGATATCTACG
GCGATCTGAGTTTCTCCCCGGAACGCCCCCGGGCGGCCAAGGCCTTCGACGAGGCAGGGCTCGTCCTGTACTGCACATCG
GTCACCAAAACCGTTGCACCGGGCTACCGGGTCGGCTGGGTGGCTCCGGGGATCTTCCAAAAGGAGATCGAGCGGCTCAA
AGCGGTGACCACCATCGCCTGCTCTACGCCCACGGAGCTTGCCGTGGCGGAGTTTCTTGCCAACGGCGGGTATGACCACC
ACCTGCGGCGCATCCGCAGGATCTACGCCCGCCAGATGTCCCTCATGGCCGAGGCGGTGGGGCAGGCATTCCCGGTCGGT
ACCCGTGTCACCCGACCCGAAGGGGGGTTTGTCCTCTGGGTCGAATGCCCCGAGCGGGTGGACTCCCTGGTTCTCTACGA
GCAGGCGCTCACCAGGGGGATCACCATTGCGCCGGGTCCAATTTTTTCGGCCACCGGCAAGTACCGCAACTGCATCCGCC
TGAACGCCGCATGGTGGGACGATCGGGTGGAACGGGCCATCCATACCCTTGGAGAACTGGCCGCCGCCATGATGTGA

Upstream 100 bases:

>100_bases
ACTGTATCTACCCAGCATATGGAGTTGCGACGTATACTTTTCCTCACCGAGTGTACCGGTCGAAAACGTTCTCGGGGAGA
CTAGGACCATGACACTAGCG

Downstream 100 bases:

>100_bases
TTGGCGAGCCCGGCGCCTATCTGCTATCCTGTTCCGGCGATCATGGCCACCCGGCAATCCGACAGAACCAAGCAATGACA
CAGACCGATACCGATCTCTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MNTVKSGGKIPLYESVAGRVAQLIGEGTFRAGDRIPSVRALGRQFQVSLTTVMEAYTLLEDRGLIEARPQSGYYVRARFP
GSTAEPEMTAPPLKPTTVGTAELSMMVMRDTRNPDLVPLGAAIPNPELLPVDRLNRMLATESRKHAVASVSYDMPPGCER
LRVQIARRMLAVGCALAPDQIVTTSGCIEAVVLSLRAICRPGDTVAVESPVYYNFLQAIDLMGLKALEIPTHPRTGISLD
ALRYALDHTPIRACLVVANFNNPLGSLMPDDHKRELVAMLAARRIPLIEDDIYGDLSFSPERPRAAKAFDEAGLVLYCTS
VTKTVAPGYRVGWVAPGIFQKEIERLKAVTTIACSTPTELAVAEFLANGGYDHHLRRIRRIYARQMSLMAEAVGQAFPVG
TRVTRPEGGFVLWVECPERVDSLVLYEQALTRGITIAPGPIFSATGKYRNCIRLNAAWWDDRVERAIHTLGELAAAMM

Sequences:

>Translated_478_residues
MNTVKSGGKIPLYESVAGRVAQLIGEGTFRAGDRIPSVRALGRQFQVSLTTVMEAYTLLEDRGLIEARPQSGYYVRARFP
GSTAEPEMTAPPLKPTTVGTAELSMMVMRDTRNPDLVPLGAAIPNPELLPVDRLNRMLATESRKHAVASVSYDMPPGCER
LRVQIARRMLAVGCALAPDQIVTTSGCIEAVVLSLRAICRPGDTVAVESPVYYNFLQAIDLMGLKALEIPTHPRTGISLD
ALRYALDHTPIRACLVVANFNNPLGSLMPDDHKRELVAMLAARRIPLIEDDIYGDLSFSPERPRAAKAFDEAGLVLYCTS
VTKTVAPGYRVGWVAPGIFQKEIERLKAVTTIACSTPTELAVAEFLANGGYDHHLRRIRRIYARQMSLMAEAVGQAFPVG
TRVTRPEGGFVLWVECPERVDSLVLYEQALTRGITIAPGPIFSATGKYRNCIRLNAAWWDDRVERAIHTLGELAAAMM
>Mature_478_residues
MNTVKSGGKIPLYESVAGRVAQLIGEGTFRAGDRIPSVRALGRQFQVSLTTVMEAYTLLEDRGLIEARPQSGYYVRARFP
GSTAEPEMTAPPLKPTTVGTAELSMMVMRDTRNPDLVPLGAAIPNPELLPVDRLNRMLATESRKHAVASVSYDMPPGCER
LRVQIARRMLAVGCALAPDQIVTTSGCIEAVVLSLRAICRPGDTVAVESPVYYNFLQAIDLMGLKALEIPTHPRTGISLD
ALRYALDHTPIRACLVVANFNNPLGSLMPDDHKRELVAMLAARRIPLIEDDIYGDLSFSPERPRAAKAFDEAGLVLYCTS
VTKTVAPGYRVGWVAPGIFQKEIERLKAVTTIACSTPTELAVAEFLANGGYDHHLRRIRRIYARQMSLMAEAVGQAFPVG
TRVTRPEGGFVLWVECPERVDSLVLYEQALTRGITIAPGPIFSATGKYRNCIRLNAAWWDDRVERAIHTLGELAAAMM

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=279, Percent_Identity=24.7311827956989, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI33469970, Length=279, Percent_Identity=24.7311827956989, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI4507369, Length=282, Percent_Identity=27.3049645390071, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1790797, Length=445, Percent_Identity=40.4494382022472, Blast_Score=353, Evalue=1e-98,
Organism=Escherichia coli, GI1787710, Length=463, Percent_Identity=39.7408207343413, Blast_Score=352, Evalue=3e-98,
Organism=Caenorhabditis elegans, GI17567663, Length=329, Percent_Identity=23.4042553191489, Blast_Score=66, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6321000, Length=239, Percent_Identity=22.5941422594142, Blast_Score=70, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6322401, Length=254, Percent_Identity=22.4409448818898, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI18859735, Length=182, Percent_Identity=28.021978021978, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52357; Mature: 52357

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTVKSGGKIPLYESVAGRVAQLIGEGTFRAGDRIPSVRALGRQFQVSLTTVMEAYTLLE
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHH
DRGLIEARPQSGYYVRARFPGSTAEPEMTAPPLKPTTVGTAELSMMVMRDTRNPDLVPLG
CCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEC
AAIPNPELLPVDRLNRMLATESRKHAVASVSYDMPPGCERLRVQIARRMLAVGCALAPDQ
CCCCCCCCCCHHHHHHHHHHCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
IVTTSGCIEAVVLSLRAICRPGDTVAVESPVYYNFLQAIDLMGLKALEIPTHPRTGISLD
EEECHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHH
ALRYALDHTPIRACLVVANFNNPLGSLMPDDHKRELVAMLAARRIPLIEDDIYGDLSFSP
HHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
ERPRAAKAFDEAGLVLYCTSVTKTVAPGYRVGWVAPGIFQKEIERLKAVTTIACSTPTEL
CCCHHHHHHCCCCEEEEEECHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHEECCCCHHH
AVAEFLANGGYDHHLRRIRRIYARQMSLMAEAVGQAFPVGTRVTRPEGGFVLWVECPERV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECHHHH
DSLVLYEQALTRGITIAPGPIFSATGKYRNCIRLNAAWWDDRVERAIHTLGELAAAMM
HHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNTVKSGGKIPLYESVAGRVAQLIGEGTFRAGDRIPSVRALGRQFQVSLTTVMEAYTLLE
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHH
DRGLIEARPQSGYYVRARFPGSTAEPEMTAPPLKPTTVGTAELSMMVMRDTRNPDLVPLG
CCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEC
AAIPNPELLPVDRLNRMLATESRKHAVASVSYDMPPGCERLRVQIARRMLAVGCALAPDQ
CCCCCCCCCCHHHHHHHHHHCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
IVTTSGCIEAVVLSLRAICRPGDTVAVESPVYYNFLQAIDLMGLKALEIPTHPRTGISLD
EEECHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCHH
ALRYALDHTPIRACLVVANFNNPLGSLMPDDHKRELVAMLAARRIPLIEDDIYGDLSFSP
HHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
ERPRAAKAFDEAGLVLYCTSVTKTVAPGYRVGWVAPGIFQKEIERLKAVTTIACSTPTEL
CCCHHHHHHCCCCEEEEEECHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHEECCCCHHH
AVAEFLANGGYDHHLRRIRRIYARQMSLMAEAVGQAFPVGTRVTRPEGGFVLWVECPERV
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEECHHHH
DSLVLYEQALTRGITIAPGPIFSATGKYRNCIRLNAAWWDDRVERAIHTLGELAAAMM
HHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]