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The map label for this gene is bphB [H]

Identifier: 39995120

GI number: 39995120

Start: 15619

End: 17118

Strand: Direct

Name: bphB [H]

Synonym: GSU0009

Alternate gene names: 39995120

Gene position: 15619-17118 (Clockwise)

Preceding gene: 39995119

Following gene: 39995121

Centisome position: 0.41

GC content: 62.47

Gene sequence:

>1500_bases
ATGGGCAACGAACATCGCCGTGCTCCCCATCAAATTGCGGCCATCTACCTTGTGGTGGGGATGTTCTGGATTCTTTTTTC
CGACCGCATCCTGACGGGGATCGCACCGGAGGCGGCGCAGCTCACCCGACTGCAGACCGCTAAGGGATGGTTTTACGTGG
CCGCAACCGCCGGCCTGCTCTACTGGCTCGTCCGCCGCTACGCACTGAGCGCTGAACGGGCCGAAGACGAACTACGCGCC
CGCAACGAAGAGCTGTGCATGGTGGAAGAAGAACTGCGCCAGCAGCTGGACGAGTATGAAAAGAGCCAATTTGAGCTGCA
CGAGACGAACCAGGCTTTGCGCGCGTCAGAGGAGCGCTATCGCGTTCTGTTTGCCAGCAATCCACACCCCATGTGGGTCT
GCGACCTTGACACCAAGGCCTTTCTGGAGGTAAACGACGCCGCGGTAACACATTACGGCTACTCGCGCGAGGAGTTCCTC
GCCATGACCATGCGTGATATCGGGCCGGCCGCCGGTAGTCCGGCCCCCGGGGAGGGCGCGGCGCAGGCACGGGAATGTCC
CTGCCTGAAGCCGACCGGTATCCAGTGCCACCGGAAAAAGGACGGGACCCTGATCGCCGTCGAGATTACCTCTCATACCC
TTGATTTCGGCGGTCGGCCCGCAGAAGTGGTTTTGGCCAGCAACGTAACCGAGCGGATCAAGGCGGATGAAGAAGTCCGT
CGTCTCAACGCCGAGTTGGAGGAGCGGGTGGAGGCGCGTACCCAGGAATTGCAACGGGCGAATCGCGAGCTGGAGTCCTT
CAGCTACTCCGTGTCCCATGACCTGAGGGCGCCGCTCAGGCACATCGACGGCTTCAGCAGGATGCTGGTGGAGGATTACG
GGGAGCGGATCGATACCGCGGGCAAGGGATACATCCAGAGAATCAGGTCGGCTGCCCAGCGGATGGGGTGTCTCATCGAC
GACCTGTTGCAGCTGGCCAATGTGAGCCGGAGCGAGCTGGAAAAACGCCAGGTGAACCTGAGCGCGCTTGCCCAGGTGAT
CGGCCTGGGGCTGAAACAGATCGAAGGGCGGGAGGATGTGACCCTGCGCATCACGGAGGGGGTCATGGCGTTCGGCGACC
CGCGGCTGTTGCGGGTTGTGCTGGAAAATCTCCTGAGCAACGCGTGGAAGTACACCGGCAAGCGCGCCGATGCCGTCATC
GAGTTTGCCGTTGAGGAACAGGGCAGCGGGCGGCCCGTCTACCTAGTCCGTGACAACGGGGTCGGTTTCGACATGACCTT
TGCCGGCAAGCTCTTCACCCCGTTCCAGCGCCTGCACAGTGCCGACGAGTTCGAGGGAACCGGCATCGGTCTCGCCACGG
TGCGCCGCATCGTGGAGCGGCACGGCGGTACCGTCTGGGTCGAGGCAGCCCCGGATCACGGTGCCACATTCTACTTCACC
CTGGGCGAGGAAGAGCACCTCGCCCGGAATTCCGACAAAGAGGACGGAACAACCCAATGA

Upstream 100 bases:

>100_bases
GGCTATATCTGGGCGGAGAGCGTCGAAGGGGAAGGCAGTTCCTTCAACATGCTGTTCCCTCTCACGAACGAAGCGTACGC
CGCGACGGGAGGATAACGGC

Downstream 100 bases:

>100_bases
CCGAAAAGAAACTGCGACTGCTTCTCGTGGAGGATAGCGAGGACGATGCCCTGCTGCTCCTGAACGACCTGAAGCGCGGC
GGCTACAGCGTGGAGCACGA

Product: sensory box histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MGNEHRRAPHQIAAIYLVVGMFWILFSDRILTGIAPEAAQLTRLQTAKGWFYVAATAGLLYWLVRRYALSAERAEDELRA
RNEELCMVEEELRQQLDEYEKSQFELHETNQALRASEERYRVLFASNPHPMWVCDLDTKAFLEVNDAAVTHYGYSREEFL
AMTMRDIGPAAGSPAPGEGAAQARECPCLKPTGIQCHRKKDGTLIAVEITSHTLDFGGRPAEVVLASNVTERIKADEEVR
RLNAELEERVEARTQELQRANRELESFSYSVSHDLRAPLRHIDGFSRMLVEDYGERIDTAGKGYIQRIRSAAQRMGCLID
DLLQLANVSRSELEKRQVNLSALAQVIGLGLKQIEGREDVTLRITEGVMAFGDPRLLRVVLENLLSNAWKYTGKRADAVI
EFAVEEQGSGRPVYLVRDNGVGFDMTFAGKLFTPFQRLHSADEFEGTGIGLATVRRIVERHGGTVWVEAAPDHGATFYFT
LGEEEHLARNSDKEDGTTQ

Sequences:

>Translated_499_residues
MGNEHRRAPHQIAAIYLVVGMFWILFSDRILTGIAPEAAQLTRLQTAKGWFYVAATAGLLYWLVRRYALSAERAEDELRA
RNEELCMVEEELRQQLDEYEKSQFELHETNQALRASEERYRVLFASNPHPMWVCDLDTKAFLEVNDAAVTHYGYSREEFL
AMTMRDIGPAAGSPAPGEGAAQARECPCLKPTGIQCHRKKDGTLIAVEITSHTLDFGGRPAEVVLASNVTERIKADEEVR
RLNAELEERVEARTQELQRANRELESFSYSVSHDLRAPLRHIDGFSRMLVEDYGERIDTAGKGYIQRIRSAAQRMGCLID
DLLQLANVSRSELEKRQVNLSALAQVIGLGLKQIEGREDVTLRITEGVMAFGDPRLLRVVLENLLSNAWKYTGKRADAVI
EFAVEEQGSGRPVYLVRDNGVGFDMTFAGKLFTPFQRLHSADEFEGTGIGLATVRRIVERHGGTVWVEAAPDHGATFYFT
LGEEEHLARNSDKEDGTTQ
>Mature_498_residues
GNEHRRAPHQIAAIYLVVGMFWILFSDRILTGIAPEAAQLTRLQTAKGWFYVAATAGLLYWLVRRYALSAERAEDELRAR
NEELCMVEEELRQQLDEYEKSQFELHETNQALRASEERYRVLFASNPHPMWVCDLDTKAFLEVNDAAVTHYGYSREEFLA
MTMRDIGPAAGSPAPGEGAAQARECPCLKPTGIQCHRKKDGTLIAVEITSHTLDFGGRPAEVVLASNVTERIKADEEVRR
LNAELEERVEARTQELQRANRELESFSYSVSHDLRAPLRHIDGFSRMLVEDYGERIDTAGKGYIQRIRSAAQRMGCLIDD
LLQLANVSRSELEKRQVNLSALAQVIGLGLKQIEGREDVTLRITEGVMAFGDPRLLRVVLENLLSNAWKYTGKRADAVIE
FAVEEQGSGRPVYLVRDNGVGFDMTFAGKLFTPFQRLHSADEFEGTGIGLATVRRIVERHGGTVWVEAAPDHGATFYFTL
GEEEHLARNSDKEDGTTQ

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=237, Percent_Identity=28.2700421940928, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1789149, Length=255, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786912, Length=266, Percent_Identity=28.9473684210526, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1790436, Length=225, Percent_Identity=30.6666666666667, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788549, Length=214, Percent_Identity=27.1028037383178, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI145693157, Length=249, Percent_Identity=26.1044176706827, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786600, Length=232, Percent_Identity=26.2931034482759, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1790346, Length=231, Percent_Identity=27.7056277056277, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081816, Length=263, Percent_Identity=26.9961977186312, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790551, Length=233, Percent_Identity=28.3261802575107, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI1786783, Length=255, Percent_Identity=27.0588235294118, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 56117; Mature: 55986

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50112 PAS ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNEHRRAPHQIAAIYLVVGMFWILFSDRILTGIAPEAAQLTRLQTAKGWFYVAATAGLL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEHHHHHHHH
YWLVRRYALSAERAEDELRARNEELCMVEEELRQQLDEYEKSQFELHETNQALRASEERY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
RVLFASNPHPMWVCDLDTKAFLEVNDAAVTHYGYSREEFLAMTMRDIGPAAGSPAPGEGA
EEEEECCCCCEEEEECCCCEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCC
AQARECPCLKPTGIQCHRKKDGTLIAVEITSHTLDFGGRPAEVVLASNVTERIKADEEVR
CHHHCCCCCCCCCCEEEECCCCCEEEEEEECEECCCCCCCCEEEEECCHHHHHCCHHHHH
RLNAELEERVEARTQELQRANRELESFSYSVSHDLRAPLRHIDGFSRMLVEDYGERIDTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GKGYIQRIRSAAQRMGCLIDDLLQLANVSRSELEKRQVNLSALAQVIGLGLKQIEGREDV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCHHHHCCCCCCE
TLRITEGVMAFGDPRLLRVVLENLLSNAWKYTGKRADAVIEFAVEEQGSGRPVYLVRDNG
EEEEECCHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCCEEEEEECCC
VGFDMTFAGKLFTPFQRLHSADEFEGTGIGLATVRRIVERHGGTVWVEAAPDHGATFYFT
CCEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEEE
LGEEEHLARNSDKEDGTTQ
ECCHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GNEHRRAPHQIAAIYLVVGMFWILFSDRILTGIAPEAAQLTRLQTAKGWFYVAATAGLL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEHHHHHHHH
YWLVRRYALSAERAEDELRARNEELCMVEEELRQQLDEYEKSQFELHETNQALRASEERY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
RVLFASNPHPMWVCDLDTKAFLEVNDAAVTHYGYSREEFLAMTMRDIGPAAGSPAPGEGA
EEEEECCCCCEEEEECCCCEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCC
AQARECPCLKPTGIQCHRKKDGTLIAVEITSHTLDFGGRPAEVVLASNVTERIKADEEVR
CHHHCCCCCCCCCCEEEECCCCCEEEEEEECEECCCCCCCCEEEEECCHHHHHCCHHHHH
RLNAELEERVEARTQELQRANRELESFSYSVSHDLRAPLRHIDGFSRMLVEDYGERIDTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GKGYIQRIRSAAQRMGCLIDDLLQLANVSRSELEKRQVNLSALAQVIGLGLKQIEGREDV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCHHHHCCCCCCE
TLRITEGVMAFGDPRLLRVVLENLLSNAWKYTGKRADAVIEFAVEEQGSGRPVYLVRDNG
EEEEECCHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHEEEEECCCCCCCEEEEEECCC
VGFDMTFAGKLFTPFQRLHSADEFEGTGIGLATVRRIVERHGGTVWVEAAPDHGATFYFT
CCEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEEE
LGEEEHLARNSDKEDGTTQ
ECCHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]