Definition Geobacter sulfurreducens PCA chromosome, complete genome.
Accession NC_002939
Length 3,814,139

Click here to switch to the map view.

The map label for this gene is ppdD [C]

Identifier: 308513307

GI number: 308513307

Start: 1939853

End: 1940266

Strand: Reverse

Name: ppdD [C]

Synonym: NA

Alternate gene names: 308513307

Gene position: 1940266-1939853 (Counterclockwise)

Preceding gene: 39996876

Following gene: 39996874

Centisome position: 50.87

GC content: 51.93

Gene sequence:

>414_bases
ATGCTGAAACGTTTTCGTAACCGCAAGGGGTTTACCCTCATTGAGCTGATGATCGTCGTGACCATCATCGGCATTCTCGC
GGCAATTGCCGTCCCCAACTACAGGTGGGGGCTCATCAGGGCTCGTGAGGCTGTCCTGCAGGAAAACCTCTACACCATGC
GCAGTGCCATAGATCAGTACTATGCGGATCAGGGGAAATATCCCGACACCCTTGACGAGTTGGCGGAAAAACGGTATGTC
AAATCAATCCCCAATGACCCGTTTACCGGTAAGAATGACACATGGGTTACCGTAAAGCCTATTGAGCCCACCGGCGAAAT
TCATACTACCGAGGAGATCAAGGGTAATGTGGCGGATGTGCACAGCGGCTCAGACCTTGTCAGTTCAAAAGGTACTCCGT
ACAAGGACTGGTGA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: pilin domain-containing protein

Products: NA

Alternate protein names: General Secretion Pathway Protein G; N-Terminal Methylation; Secretion Protein; Methylation; Pilus Assembly Protein; General Secretion Pathway GSPG-Like Transmembrane Protein; General Secretion Pathway GSPG-Like; GSPG-Related Protein; N-Terminal Methylation Site; Type II Secretion System Pseudopilin OxpG; Pilin Domain-Containing Protein; Type II Secretion System Protein; General Secretion Pathway Protein; N-Terminal Methylation Motif Domain Protein; Fimbrial Protein Pilin; Prokaryotic N-Terminal Methylation Site

Number of amino acids: Translated: 137; Mature: 137

Protein sequence:
NA

Sequences:

>Translated_137_residues
MLKRFRNRKGFTLIELMIVVTIIGILAAIAVPNYRWGLIRAREAVLQENLYTMRSAIDQYYADQGKYPDTLDELAEKRYV
KSIPNDPFTGKNDTWVTVKPIEPTGEIHTTEEIKGNVADVHSGSDLVSSKGTPYKDW
>Mature_137_residues
MLKRFRNRKGFTLIELMIVVTIIGILAAIAVPNYRWGLIRAREAVLQENLYTMRSAIDQYYADQGKYPDTLDELAEKRYV
KSIPNDPFTGKNDTWVTVKPIEPTGEIHTTEEIKGNVADVHSGSDLVSSKGTPYKDW

Specific function: Not Yet Known. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15575; Mature: 15575

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRFRNRKGFTLIELMIVVTIIGILAAIAVPNYRWGLIRAREAVLQENLYTMRSAIDQY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YADQGKYPDTLDELAEKRYVKSIPNDPFTGKNDTWVTVKPIEPTGEIHTTEEIKGNVADV
HHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCC
HSGSDLVSSKGTPYKDW
CCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MLKRFRNRKGFTLIELMIVVTIIGILAAIAVPNYRWGLIRAREAVLQENLYTMRSAIDQY
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YADQGKYPDTLDELAEKRYVKSIPNDPFTGKNDTWVTVKPIEPTGEIHTTEEIKGNVADV
HHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCC
HSGSDLVSSKGTPYKDW
CCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA