| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is recC [H]
Identifier: 308513303
GI number: 308513303
Start: 1680246
End: 1683440
Strand: Direct
Name: recC [H]
Synonym: NA
Alternate gene names: 308513303
Gene position: 1680246-1683440 (Clockwise)
Preceding gene: 39996632
Following gene: 39996634
Centisome position: 44.05
GC content: 70.42
Gene sequence:
>3195_bases TTGCCCCTGACCATCTACACGAGCAACCGGATGGAGGCCCTGGTCGAGCAGCTTTGCGCCGTGGTCGAGCCCCCCCTGTC GTCACCCTTTGTTCCCGAGACCATCGTGGTGCAGAGCCGGGGCATGGAACGGTGGCTCGCCATGGAGCTGGCAAAGCGCC TGGGGATCTGGGCGAACGGCTCCTATCCCTTTCCCAATGCCTTTGTCTGGTCGCTCTTCCGGGCGGCGCTGCCCCATCTG CCGGACCAGTCCCCCTTTGACCCCGCCATCCTGACTTGGCGGATCATGGACCTGCTGCCGCGCCTGCTCCCGGAACCGGC CTTCGGCCAGTTGCGGGGGTATCTGGCCGGGGAGGACCGGGAACTGCGGCTCTACCAGCTTGCGGCCAGGATCGCCGACA CCTTTGACCAGTACACCGTGTTCCGGGGCGACCTGCTGGCGACCTGGGAAACGGGGCGGGACCAGCAGTGGCAGGCCCGG CTCTGGCGCGCATTGACCGCGGACAGCCCCGGTACCCACCGGGGGGCCGTGCGCGACGCATTTCTGAAACAGCTGGCCGG GGGGCGTCTCCCTGCCGGCGTCTGCCCCGAACGGGTGTCGGTCTTCGGCATCTCGTACCTTCCGCCGTTCCACCTGGAGA TCTTCACCTCCCTGGCCCGGCTCTGCCCGGTGAACCTGTTCGTCCTGAGCCCCTGCCGGGAATACTGGGGGGATATCGTC TCGCCCGGCGCCCGGGCGCGGATGACCCCGGAGCGCCGGCAGCAGGCCGTGGAGGGGCATCCGCTGCTTGCCTCCCTGGG CAAGCCGGGGCGCGATTTCTCGTCCCTCATCCTGGCCTGCGACGACTTGTCGGGCGGCGAGCGCGACCTCTATGCCGACG CCCCCGGCGAAACGCTCCTGGCAGCGGTGCAGAACGGCATCCTTACCCTGGACGAGGCCGACGGCACTCCGCGCCTGGTC CGGGTGGACCCCGGCGACCGCTCGATCGGGATTCATTCCTGTCACGGCCCCATGCGCGAGGCGGAGGTGCTCCACGACGT CCTGCTGGCCATGTTCGAGGACCTGCCCGGCCTCACGCCCCGGGATATCCTCGTGATGACGCCGGACATCGAGACCTATG CCCCCTATGTTGCCGCGGTGTTCGGCGGCGGTCAGGACCAGCGGCGGCGCATCCCGTTTTCCATTGCCGACCGGAGCATC AGGAGTGCGGGGGGAGCGGCCGACGCCTTCCTGGCCATCCTCGATCTCCCCCTGGGCCGCTTCCCGGCGACCGGTGTGCT GGACATCCTGGAGACCGGCGCGGTCCACCGCCGTTTCGGCATCGACGAGGCCGGTCTCGAACAGATCCGCTCCTGGGTTG AGGCCACCCGCATCCGTTGGGGCATGGACGAGAACGAGCGCCGGGCTGCCGGGCTGCCTGCCTACCGGGAGAACAGCTGG CAGGCGGGGCTCGACCGGCTGCTGCTGGGGGTGGCCATGCCCGACGAGGAAGGGGCCATGTTCGGCGGCATCCTCCCCCA CGATGCCATGGAAGGGGACGGGCCGGTGCTCCTGGGGCGCTTCATCCGCTTCGTGGAGGCCCTGGAGCGGGTGCGGCAGG ATCTGGCGCGCCCCCGCTCCCTTGAGGGGTGGACAGCGACCCTGCGCGGCATCCTGGCCGACTTCTTCAATCCCGATGAC GCCACCGCCTTCGAACGTGCCGCCTTGGGCAGGATCGTGGACGGCCTCGGCGAACTCGGCGCGGGCTCCGGCTTCACGGA CGAGGTGGGGCGGTCCGTGATCAGGGCCTGGCTCGGCGAACGGCTCGACAGGCCCGACCAGGGGCTCGGCTTCATGACCG GCGGGGTCACCTTCTGCGCCATGCTCCCCATGCGGAGCATCCCTTTCCGGGTGATCTGCCTGCTGGGGGTGAACGACGAC TCCTTCCCCCGCCGGGACCGCGCCGCCGGCTTCGACCTGATGGCCGCAGACCGCCGTCCCGGCGACCGGTCCCTGCGGGA GGAGGACCGCTACCTCTTTCTGGAAGCCCTCCTCTCGGCCCGGGAGCGCCTGGTGATCAGCTACACCGGTCAGAGCGTCC GGGATAACGCCGAGCTTCCCCCGTCGGTGCTGGTGAGCGAGTTCCTCGACTACCTGGGATCGCGCTTCACGGACGGCACC GACCGGTTCCCGGCCTCCCTGGTGACACGGCACCGGCTCCAGCCCTTCAGCCCCGCCTACTTCACCGGTGACGGCGGGCT GTTCAGTTACGCGGCCGAAGAGTGTCGCGCCCTGTCCCGTCGCGGCAGGGACGACGCACCGCGCCCCTTCCTGGAGCACC CCCTGGCCGAGTCCGGTCCGGCGTCGGCCGACGAAACGGAGATCCTGCCCCTGGCGCAGCTCATCTCCTTTTTCGAGCAC CCGGTGCGCTACCTCATGCGTCACCGGCTCGGCATCCGCCTGGAGGAGAGCCGCTCCCCCCTGGAGGACCGGGAGCCCTT TGCCCTGGACTCTCTGGATGCCTTCCTGCTGGAACAGGAGATCCTGGACCACATTCTGGCGGGCGGCGACCCGGCCGACC TCCTCCCCGTGGCCCGGGCCCGGGGCGGCCTGCCCCCGGCGCGCCAGGGAGAGCTGGCCTTTGCGGGGCTCACCGCCCGG GTGCGGGACCTGGCCGACCGGGTCCGGCCGGCAACCAACGGCCAGCCCCCCCTCGAACCCCTGACCGTGGACCTGCGGGT GGGTGAGCGGCGGCTCGTGGGCGAGCTGGGTTCCCTCTGGCCCGCCGGCCTTATCCGCTGGCGCTGTGCCAGGCTGTCCG GCCGCGACCACATCCGGCTCTGGATTGAGCACCTGGTTTTCAATGCCCTGGCATTGCCCGCCACCGGGGCGGCAAGCAGG CTCCTGGCCGCTGACGGCGACCTGGCGCTCCGTCCCGTGGCCGATCCCCTTGCGCACCTGGAGGCTCTGGTGTCGTACTA CGGGCAGGGGAGCCGGGAGCCGCTGCGGTTCTTCCCGCGCAGCTCCCTGGCCTTTGCCCGCACGGGCGAGATGGCGGCGG CCCGCACCACCTGGGGGGGAGACTTCTACCCAGAGGGGGACGATCCCTACTATGCGCTCTGCTTCGGCACTGCCGATCCC CTGGACGACGCCTTCCGCGAGACGTCCGTCGCAATCCTGACCCCCCTGCTGGCCCACCGGGAGGACGAGCGGTGA
Upstream 100 bases:
NA
Downstream 100 bases:
NA
Product: exodeoxyribonuclease V subunit gamma
Products: NA
Alternate protein names: Exodeoxyribonuclease V 125 kDa polypeptide [H]
Number of amino acids: Translated: 1064; Mature: 1063
Protein sequence:
NA
Sequences:
>Translated_1064_residues MPLTIYTSNRMEALVEQLCAVVEPPLSSPFVPETIVVQSRGMERWLAMELAKRLGIWANGSYPFPNAFVWSLFRAALPHL PDQSPFDPAILTWRIMDLLPRLLPEPAFGQLRGYLAGEDRELRLYQLAARIADTFDQYTVFRGDLLATWETGRDQQWQAR LWRALTADSPGTHRGAVRDAFLKQLAGGRLPAGVCPERVSVFGISYLPPFHLEIFTSLARLCPVNLFVLSPCREYWGDIV SPGARARMTPERRQQAVEGHPLLASLGKPGRDFSSLILACDDLSGGERDLYADAPGETLLAAVQNGILTLDEADGTPRLV RVDPGDRSIGIHSCHGPMREAEVLHDVLLAMFEDLPGLTPRDILVMTPDIETYAPYVAAVFGGGQDQRRRIPFSIADRSI RSAGGAADAFLAILDLPLGRFPATGVLDILETGAVHRRFGIDEAGLEQIRSWVEATRIRWGMDENERRAAGLPAYRENSW QAGLDRLLLGVAMPDEEGAMFGGILPHDAMEGDGPVLLGRFIRFVEALERVRQDLARPRSLEGWTATLRGILADFFNPDD ATAFERAALGRIVDGLGELGAGSGFTDEVGRSVIRAWLGERLDRPDQGLGFMTGGVTFCAMLPMRSIPFRVICLLGVNDD SFPRRDRAAGFDLMAADRRPGDRSLREEDRYLFLEALLSARERLVISYTGQSVRDNAELPPSVLVSEFLDYLGSRFTDGT DRFPASLVTRHRLQPFSPAYFTGDGGLFSYAAEECRALSRRGRDDAPRPFLEHPLAESGPASADETEILPLAQLISFFEH PVRYLMRHRLGIRLEESRSPLEDREPFALDSLDAFLLEQEILDHILAGGDPADLLPVARARGGLPPARQGELAFAGLTAR VRDLADRVRPATNGQPPLEPLTVDLRVGERRLVGELGSLWPAGLIRWRCARLSGRDHIRLWIEHLVFNALALPATGAASR LLAADGDLALRPVADPLAHLEALVSYYGQGSREPLRFFPRSSLAFARTGEMAAARTTWGGDFYPEGDDPYYALCFGTADP LDDAFRETSVAILTPLLAHREDER >Mature_1063_residues PLTIYTSNRMEALVEQLCAVVEPPLSSPFVPETIVVQSRGMERWLAMELAKRLGIWANGSYPFPNAFVWSLFRAALPHLP DQSPFDPAILTWRIMDLLPRLLPEPAFGQLRGYLAGEDRELRLYQLAARIADTFDQYTVFRGDLLATWETGRDQQWQARL WRALTADSPGTHRGAVRDAFLKQLAGGRLPAGVCPERVSVFGISYLPPFHLEIFTSLARLCPVNLFVLSPCREYWGDIVS PGARARMTPERRQQAVEGHPLLASLGKPGRDFSSLILACDDLSGGERDLYADAPGETLLAAVQNGILTLDEADGTPRLVR VDPGDRSIGIHSCHGPMREAEVLHDVLLAMFEDLPGLTPRDILVMTPDIETYAPYVAAVFGGGQDQRRRIPFSIADRSIR SAGGAADAFLAILDLPLGRFPATGVLDILETGAVHRRFGIDEAGLEQIRSWVEATRIRWGMDENERRAAGLPAYRENSWQ AGLDRLLLGVAMPDEEGAMFGGILPHDAMEGDGPVLLGRFIRFVEALERVRQDLARPRSLEGWTATLRGILADFFNPDDA TAFERAALGRIVDGLGELGAGSGFTDEVGRSVIRAWLGERLDRPDQGLGFMTGGVTFCAMLPMRSIPFRVICLLGVNDDS FPRRDRAAGFDLMAADRRPGDRSLREEDRYLFLEALLSARERLVISYTGQSVRDNAELPPSVLVSEFLDYLGSRFTDGTD RFPASLVTRHRLQPFSPAYFTGDGGLFSYAAEECRALSRRGRDDAPRPFLEHPLAESGPASADETEILPLAQLISFFEHP VRYLMRHRLGIRLEESRSPLEDREPFALDSLDAFLLEQEILDHILAGGDPADLLPVARARGGLPPARQGELAFAGLTARV RDLADRVRPATNGQPPLEPLTVDLRVGERRLVGELGSLWPAGLIRWRCARLSGRDHIRLWIEHLVFNALALPATGAASRL LAADGDLALRPVADPLAHLEALVSYYGQGSREPLRFFPRSSLAFARTGEMAAARTTWGGDFYPEGDDPYYALCFGTADPL DDAFRETSVAILTPLLAHREDER
Specific function: Exhibits a wide variety of catalytic activities including ATP-dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent helicase and DNA-dependent ATPase activities [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789186, Length=1135, Percent_Identity=36.0352422907489, Blast_Score=616, Evalue=1e-177,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006697 - InterPro: IPR011335 [H]
Pfam domain/function: NA
EC number: =3.1.11.5 [H]
Molecular weight: Translated: 117554; Mature: 117423
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLTIYTSNRMEALVEQLCAVVEPPLSSPFVPETIVVQSRGMERWLAMELAKRLGIWANG CCEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEECC SYPFPNAFVWSLFRAALPHLPDQSPFDPAILTWRIMDLLPRLLPEPAFGQLRGYLAGEDR CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC ELRLYQLAARIADTFDQYTVFRGDLLATWETGRDQQWQARLWRALTADSPGTHRGAVRDA CHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH FLKQLAGGRLPAGVCPERVSVFGISYLPPFHLEIFTSLARLCPVNLFVLSPCREYWGDIV HHHHHCCCCCCCCCCCCHHHHEEECCCCCHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHC SPGARARMTPERRQQAVEGHPLLASLGKPGRDFSSLILACDDLSGGERDLYADAPGETLL CCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCHHHHHEEECCCCCCCCCEECCCCHHHHH AAVQNGILTLDEADGTPRLVRVDPGDRSIGIHSCHGPMREAEVLHDVLLAMFEDLPGLTP HHHHCCCEEEECCCCCCEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCC RDILVMTPDIETYAPYVAAVFGGGQDQRRRIPFSIADRSIRSAGGAADAFLAILDLPLGR CCEEEECCCCHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC FPATGVLDILETGAVHRRFGIDEAGLEQIRSWVEATRIRWGMDENERRAAGLPAYRENSW CCCCHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCH QAGLDRLLLGVAMPDEEGAMFGGILPHDAMEGDGPVLLGRFIRFVEALERVRQDLARPRS HHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC LEGWTATLRGILADFFNPDDATAFERAALGRIVDGLGELGAGSGFTDEVGRSVIRAWLGE CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH RLDRPDQGLGFMTGGVTFCAMLPMRSIPFRVICLLGVNDDSFPRRDRAAGFDLMAADRRP HCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCCEEECCCCC GDRSLREEDRYLFLEALLSARERLVISYTGQSVRDNAELPPSVLVSEFLDYLGSRFTDGT CCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC DRFPASLVTRHRLQPFSPAYFTGDGGLFSYAAEECRALSRRGRDDAPRPFLEHPLAESGP CCCCHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCC ASADETEILPLAQLISFFEHPVRYLMRHRLGIRLEESRSPLEDREPFALDSLDAFLLEQE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHH ILDHILAGGDPADLLPVARARGGLPPARQGELAFAGLTARVRDLADRVRPATNGQPPLEP HHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCC LTVDLRVGERRLVGELGSLWPAGLIRWRCARLSGRDHIRLWIEHLVFNALALPATGAASR EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHH LLAADGDLALRPVADPLAHLEALVSYYGQGSREPLRFFPRSSLAFARTGEMAAARTTWGG HEECCCCEEECCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHCCCCHHHEECCCC DFYPEGDDPYYALCFGTADPLDDAFRETSVAILTPLLAHREDER CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PLTIYTSNRMEALVEQLCAVVEPPLSSPFVPETIVVQSRGMERWLAMELAKRLGIWANG CEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEECC SYPFPNAFVWSLFRAALPHLPDQSPFDPAILTWRIMDLLPRLLPEPAFGQLRGYLAGEDR CCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC ELRLYQLAARIADTFDQYTVFRGDLLATWETGRDQQWQARLWRALTADSPGTHRGAVRDA CHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHH FLKQLAGGRLPAGVCPERVSVFGISYLPPFHLEIFTSLARLCPVNLFVLSPCREYWGDIV HHHHHCCCCCCCCCCCCHHHHEEECCCCCHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHC SPGARARMTPERRQQAVEGHPLLASLGKPGRDFSSLILACDDLSGGERDLYADAPGETLL CCCCCCCCCHHHHHHHHCCCCHHHHCCCCCCCHHHHHEEECCCCCCCCCEECCCCHHHHH AAVQNGILTLDEADGTPRLVRVDPGDRSIGIHSCHGPMREAEVLHDVLLAMFEDLPGLTP HHHHCCCEEEECCCCCCEEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCC RDILVMTPDIETYAPYVAAVFGGGQDQRRRIPFSIADRSIRSAGGAADAFLAILDLPLGR CCEEEECCCCHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCC FPATGVLDILETGAVHRRFGIDEAGLEQIRSWVEATRIRWGMDENERRAAGLPAYRENSW CCCCHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCH QAGLDRLLLGVAMPDEEGAMFGGILPHDAMEGDGPVLLGRFIRFVEALERVRQDLARPRS HHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC LEGWTATLRGILADFFNPDDATAFERAALGRIVDGLGELGAGSGFTDEVGRSVIRAWLGE CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH RLDRPDQGLGFMTGGVTFCAMLPMRSIPFRVICLLGVNDDSFPRRDRAAGFDLMAADRRP HCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHCCCCEEECCCCC GDRSLREEDRYLFLEALLSARERLVISYTGQSVRDNAELPPSVLVSEFLDYLGSRFTDGT CCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC DRFPASLVTRHRLQPFSPAYFTGDGGLFSYAAEECRALSRRGRDDAPRPFLEHPLAESGP CCCCHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCC ASADETEILPLAQLISFFEHPVRYLMRHRLGIRLEESRSPLEDREPFALDSLDAFLLEQE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHH ILDHILAGGDPADLLPVARARGGLPPARQGELAFAGLTARVRDLADRVRPATNGQPPLEP HHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCC LTVDLRVGERRLVGELGSLWPAGLIRWRCARLSGRDHIRLWIEHLVFNALALPATGAASR EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHH LLAADGDLALRPVADPLAHLEALVSYYGQGSREPLRFFPRSSLAFARTGEMAAARTTWGG HEECCCCEEECCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHCCCCHHHEECCCC DFYPEGDDPYYALCFGTADPLDDAFRETSVAILTPLLAHREDER CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3520484; 9278503; 3534791 [H]