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The map label for this gene is atpF

Identifier: 57234630

GI number: 57234630

Start: 515159

End: 515668

Strand: Direct

Name: atpF

Synonym: DET0560

Alternate gene names: 57234630

Gene position: 515159-515668 (Clockwise)

Preceding gene: 57234631

Following gene: 57234629

Centisome position: 35.05

GC content: 49.22

Gene sequence:

>510_bases
GTGGAAAAACTGGCAGAACTGGGAATAAATATACCTTCTTTCATAGCCCAGGTTGTAAACTTCGGTTTACTCTTAGGTCT
GCTGTATCTGTTTGCCTATAAGCCCATTCTGGCTAAACTTGACGAGCGTTCCGCCCGTATCAAGGAAAGCATGGAACGGA
CAGACCAGGTAAAAGAGCAGGCCCAGCGGGCGGAAGAAGAGTTTAAAAAGAAGATTGGCGAAGCCAGCCAGCAGGGGCAA
CTGGTGATTGAACGGGCTGTAAAGACCGGTGATGAAATCCGCCAGAAAGCCATAGAAGAAGCTAGGGCTGAAGCTGAAGC
CATGCTTAGCCGCGCCCGGACTGAAATACGTCAGGAGCGGGATGAAGTAGTGGACCAGCTGCGCAAGGAATTTGCCGAAC
TGACCATTTTGGCGGCCGGTAAGGTTATTGACCAATCTTTAGATAAAAAGGCGCATCAGGCGCTGATTGACAGTGTGCTT
GAAAATAGCACCAACCTGCGGAAAAATTAA

Upstream 100 bases:

>100_bases
CCTTTTGGTGGCTTTCGCTGAGTCCATCGCCATCTTTGCACTGGTTATCTCTATCGTACTTATTTTCGTTGCCTAAGGGG
CATAATACAGGAGGAAACCG

Downstream 100 bases:

>100_bases
AAGAGAGCAACGGAGAAGCAGTGGCCAAAAGAGTTTATGCTATAGCCATGCGTTATGCGCAGGCATTATACGAACTGGCT
AAGGAGCAAAAGTCTCTGGA

Product: ATP synthase F0, B subunit

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(0) sector subunit b; ATPase subunit I; F-type ATPase subunit b; F-ATPase subunit b

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MEKLAELGINIPSFIAQVVNFGLLLGLLYLFAYKPILAKLDERSARIKESMERTDQVKEQAQRAEEEFKKKIGEASQQGQ
LVIERAVKTGDEIRQKAIEEARAEAEAMLSRARTEIRQERDEVVDQLRKEFAELTILAAGKVIDQSLDKKAHQALIDSVL
ENSTNLRKN

Sequences:

>Translated_169_residues
MEKLAELGINIPSFIAQVVNFGLLLGLLYLFAYKPILAKLDERSARIKESMERTDQVKEQAQRAEEEFKKKIGEASQQGQ
LVIERAVKTGDEIRQKAIEEARAEAEAMLSRARTEIRQERDEVVDQLRKEFAELTILAAGKVIDQSLDKKAHQALIDSVL
ENSTNLRKN
>Mature_169_residues
MEKLAELGINIPSFIAQVVNFGLLLGLLYLFAYKPILAKLDERSARIKESMERTDQVKEQAQRAEEEFKKKIGEASQQGQ
LVIERAVKTGDEIRQKAIEEARAEAEAMLSRARTEIRQERDEVVDQLRKEFAELTILAAGKVIDQSLDKKAHQALIDSVL
ENSTNLRKN

Specific function: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)

COG id: COG0711

COG function: function code C; F0F1-type ATP synthase, subunit b

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase B chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPF_DEHE1 (Q3Z8Z6)

Other databases:

- EMBL:   CP000027
- RefSeq:   YP_181303.1
- STRING:   Q3Z8Z6
- GeneID:   3230098
- GenomeReviews:   CP000027_GR
- KEGG:   det:DET0560
- NMPDR:   fig|243164.3.peg.418
- TIGR:   DET0560
- eggNOG:   COG0711
- HOGENOM:   HBG617328
- OMA:   NPGLIFW
- ProtClustDB:   CLSK837399
- BioCyc:   DETH243164:DET_0560-MONOMER
- HAMAP:   MF_01398
- InterPro:   IPR002146
- InterPro:   IPR005864
- TIGRFAMs:   TIGR01144

Pfam domain/function: PF00430 ATP-synt_B

EC number: 3.6.3.14

Molecular weight: Translated: 19164; Mature: 19164

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc571944)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKLAELGINIPSFIAQVVNFGLLLGLLYLFAYKPILAKLDERSARIKESMERTDQVKEQ
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQRAEEEFKKKIGEASQQGQLVIERAVKTGDEIRQKAIEEARAEAEAMLSRARTEIRQER
HHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEVVDQLRKEFAELTILAAGKVIDQSLDKKAHQALIDSVLENSTNLRKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
>Mature Secondary Structure
MEKLAELGINIPSFIAQVVNFGLLLGLLYLFAYKPILAKLDERSARIKESMERTDQVKEQ
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQRAEEEFKKKIGEASQQGQLVIERAVKTGDEIRQKAIEEARAEAEAMLSRARTEIRQER
HHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DEVVDQLRKEFAELTILAAGKVIDQSLDKKAHQALIDSVLENSTNLRKN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA