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The map label for this gene is yvrC [H]

Identifier: 57234537

GI number: 57234537

Start: 630619

End: 631635

Strand: Direct

Name: yvrC [H]

Synonym: DET0684

Alternate gene names: 57234537

Gene position: 630619-631635 (Clockwise)

Preceding gene: 57234539

Following gene: 57234536

Centisome position: 42.91

GC content: 47.98

Gene sequence:

>1017_bases
ATGCTGAGTGATATTAAAATGAAACTTAACAGTAAGAGTGCCCGCTTGGGTACGGCTGTTGCCAGTATCTTCTTAAGTTT
GGTTTTGCTGCTGGGTTTGGCAGGCGGCTGTAAAACGGCAGACGATACCGAAAATGAAGATGATACCCCGGTAGTAACCG
AAGTAAGCTATCCCTTGACAGTGACAGACCAGCTGGGCAGGACGGTAACTATTCAGTCCGAACCCCAGACTATAGTCTCT
CTTTCCCCCAGCAATACCGAAACTATTTATGCTATGGGACTGGAAGATAAACTGGTGGGTGTGACTACTTACTGCAACTA
CCCTGAGGCCGCCGCAGATAAGCCCAAGGTGGGCGGTTTTTCAACCGTAGATGTTGAAGCGGTGACTGCTATAGGACCTG
ATATTATTCTGGCCTCCAATCTTCATGAATCTACCGTTATCCCTCAGCTTGAACAGCTGGGTCTGACTGTGATAGCTATC
AGCCCGGATAATCTGGAAGAAGTAATCTCATCTATTGAGCTTATTGGCAAATGCCTTAATCAGGTTGAAAAAGCCAATTC
GCTGGTAGACGGGATGCAAACCCGTATAGATGCGGTAACAGCCAAGGTCAAAAACCTGTCTGACAGTCAGAAACCGCGTG
TTTTATACATTGTCTGGCATGAACCTCTTATGAGTGTTGGTTCTACTGCCTTTATAACCGGCTTGATTACTGCTGCCGGA
AGCGTTAGTATTACTGCTGATTCTGTAGAAGCTTATCCTACCATTAGTTTGGAAACAGTACTCGGGGCTAATCCCCAGGT
GATAGTGGTGGGTACCGGTATGGGTTCAGGGGCGGATGCGCCGCTGATTTTTATGCAGGATGAGCCCCGTCTGGCGGCTA
TTGATGCCAGAATAAACGGCAATATATATAGTATCAATACAGACCTTATCGGCCGTACCGGCCCGCGGATTGTAGATGCT
CTGGAGCAGCTGGCCCAGATGCTCCACCCTGAAATATTCGGGGCTTTCAGCGGATAA

Upstream 100 bases:

>100_bases
CGCGGTAAGAGGAGGTACGTGGCCATGCAGAAAAACTTGTAAGAGGAAACAGTTTTGCCCGTGGTTTTGGTTTCCGATAT
TAAAAATGAATGGAGCAGTT

Downstream 100 bases:

>100_bases
AGAATTCGGCTGGGGCAGGTATATACCTGCCCCACAGTTTTGCAGGTAAGAATGGGTGTTAATACAAGTCTGAATAAAGA
AAACTGCCCGGCAGTACCCG

Product: ABC-type cobalamin/Fe3+-siderophores transport system, periplasmic binding protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MLSDIKMKLNSKSARLGTAVASIFLSLVLLLGLAGGCKTADDTENEDDTPVVTEVSYPLTVTDQLGRTVTIQSEPQTIVS
LSPSNTETIYAMGLEDKLVGVTTYCNYPEAAADKPKVGGFSTVDVEAVTAIGPDIILASNLHESTVIPQLEQLGLTVIAI
SPDNLEEVISSIELIGKCLNQVEKANSLVDGMQTRIDAVTAKVKNLSDSQKPRVLYIVWHEPLMSVGSTAFITGLITAAG
SVSITADSVEAYPTISLETVLGANPQVIVVGTGMGSGADAPLIFMQDEPRLAAIDARINGNIYSINTDLIGRTGPRIVDA
LEQLAQMLHPEIFGAFSG

Sequences:

>Translated_338_residues
MLSDIKMKLNSKSARLGTAVASIFLSLVLLLGLAGGCKTADDTENEDDTPVVTEVSYPLTVTDQLGRTVTIQSEPQTIVS
LSPSNTETIYAMGLEDKLVGVTTYCNYPEAAADKPKVGGFSTVDVEAVTAIGPDIILASNLHESTVIPQLEQLGLTVIAI
SPDNLEEVISSIELIGKCLNQVEKANSLVDGMQTRIDAVTAKVKNLSDSQKPRVLYIVWHEPLMSVGSTAFITGLITAAG
SVSITADSVEAYPTISLETVLGANPQVIVVGTGMGSGADAPLIFMQDEPRLAAIDARINGNIYSINTDLIGRTGPRIVDA
LEQLAQMLHPEIFGAFSG
>Mature_338_residues
MLSDIKMKLNSKSARLGTAVASIFLSLVLLLGLAGGCKTADDTENEDDTPVVTEVSYPLTVTDQLGRTVTIQSEPQTIVS
LSPSNTETIYAMGLEDKLVGVTTYCNYPEAAADKPKVGGFSTVDVEAVTAIGPDIILASNLHESTVIPQLEQLGLTVIAI
SPDNLEEVISSIELIGKCLNQVEKANSLVDGMQTRIDAVTAKVKNLSDSQKPRVLYIVWHEPLMSVGSTAFITGLITAAG
SVSITADSVEAYPTISLETVLGANPQVIVVGTGMGSGADAPLIFMQDEPRLAAIDARINGNIYSINTDLIGRTGPRIVDA
LEQLAQMLHPEIFGAFSG

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=255, Percent_Identity=26.2745098039216, Blast_Score=85, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 35645; Mature: 35645

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSDIKMKLNSKSARLGTAVASIFLSLVLLLGLAGGCKTADDTENEDDTPVVTEVSYPLT
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCEE
VTDQLGRTVTIQSEPQTIVSLSPSNTETIYAMGLEDKLVGVTTYCNYPEAAADKPKVGGF
EHHHCCCEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCE
STVDVEAVTAIGPDIILASNLHESTVIPQLEQLGLTVIAISPDNLEEVISSIELIGKCLN
EEECEEEEECCCCCEEEECCCCCCHHCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHH
QVEKANSLVDGMQTRIDAVTAKVKNLSDSQKPRVLYIVWHEPLMSVGSTAFITGLITAAG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHCCCHHHHHHHHHCCC
SVSITADSVEAYPTISLETVLGANPQVIVVGTGMGSGADAPLIFMQDEPRLAAIDARING
CEEEEECCCCCCCCEEEEHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEEECC
NIYSINTDLIGRTGPRIVDALEQLAQMLHPEIFGAFSG
CEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCC
>Mature Secondary Structure
MLSDIKMKLNSKSARLGTAVASIFLSLVLLLGLAGGCKTADDTENEDDTPVVTEVSYPLT
CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCEE
VTDQLGRTVTIQSEPQTIVSLSPSNTETIYAMGLEDKLVGVTTYCNYPEAAADKPKVGGF
EHHHCCCEEEEECCCCEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCE
STVDVEAVTAIGPDIILASNLHESTVIPQLEQLGLTVIAISPDNLEEVISSIELIGKCLN
EEECEEEEECCCCCEEEECCCCCCHHCCCHHHCCEEEEEECCCCHHHHHHHHHHHHHHHH
QVEKANSLVDGMQTRIDAVTAKVKNLSDSQKPRVLYIVWHEPLMSVGSTAFITGLITAAG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHCCCHHHHHHHHHCCC
SVSITADSVEAYPTISLETVLGANPQVIVVGTGMGSGADAPLIFMQDEPRLAAIDARING
CEEEEECCCCCCCCEEEEHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEEEEEECC
NIYSINTDLIGRTGPRIVDALEQLAQMLHPEIFGAFSG
CEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]