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The map label for this gene is ylmE [H]

Identifier: 57234460

GI number: 57234460

Start: 699222

End: 699884

Strand: Direct

Name: ylmE [H]

Synonym: DET0758

Alternate gene names: 57234460

Gene position: 699222-699884 (Clockwise)

Preceding gene: 57234461

Following gene: 57234446

Centisome position: 47.58

GC content: 47.66

Gene sequence:

>663_bases
ATGTACGAAGATATTACTCGGAACATAAGGGACATACTGGCTGAGCTGCCGCCTGATGTGACACTTGAAGCGGCTGTCAA
AAAACGCCAGCCGGCTGAAATACTGGCGGCTATAGAGGCCGGGGTAAAGATAATTGGGCATAACTATCTATCCGAAGCGG
AGCAAACTTACCCGCTTATAGGGGAAAAGGTTGAGTGGCATTTTATCGGCAAGCTTCAGTCAAACAAATGCAAAAAAATT
GTCCGTTTGTTTTCGGTGGTTGAAACGGTGGATAGTTTTGAAATAGCCTCCGAGTTAAACCGCAGAGCTGCCGAAATTGA
CAAGGTTTTATCTGTGTTTATAGAGATAAACAGCGGACGGGAAGAACAGAAATCAGGGGTATTGCCGGAAGATACCGTGG
AACTGGCAAAGCGGTTATCCGGCTTGTCAAATCTCAGGCTTTCAGGGCTTATGACTATGGGGCCGGCACTGGAAGACCCT
GATGAACTGCGTAGCGTATTCCGCCTGACTAAAAACAAGTTTGATGAAATAGCCGCTATGGGTTTGCCTAATACCGAGCT
TAAGTTTCTTTCCATGGGCATGTCGGGCTCTTATAAAGTGGCCGTTCAGGAAGGAACTAATCTGGTCAGGCTGGGCACGC
GTATTTTTGGCCCCCGACCCTAA

Upstream 100 bases:

>100_bases
GAAACACCCCGGTACGAGTGTGCTAATTGCGAAGCCAGAGTGGAAGCCGGTATGCGTTTCTGTCCTCAATGCGGAAATAG
CCTGGGCTAAGGTTGAAAAT

Downstream 100 bases:

>100_bases
CGGGGCAGTGCTTTTAAGTGGAATACGATATCGTGCAGGTCCTGAAAAGGATAGCAGGGCAGATTACTCTGCTTAAAACG
GTCAAGCAGCATATCGGTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MYEDITRNIRDILAELPPDVTLEAAVKKRQPAEILAAIEAGVKIIGHNYLSEAEQTYPLIGEKVEWHFIGKLQSNKCKKI
VRLFSVVETVDSFEIASELNRRAAEIDKVLSVFIEINSGREEQKSGVLPEDTVELAKRLSGLSNLRLSGLMTMGPALEDP
DELRSVFRLTKNKFDEIAAMGLPNTELKFLSMGMSGSYKVAVQEGTNLVRLGTRIFGPRP

Sequences:

>Translated_220_residues
MYEDITRNIRDILAELPPDVTLEAAVKKRQPAEILAAIEAGVKIIGHNYLSEAEQTYPLIGEKVEWHFIGKLQSNKCKKI
VRLFSVVETVDSFEIASELNRRAAEIDKVLSVFIEINSGREEQKSGVLPEDTVELAKRLSGLSNLRLSGLMTMGPALEDP
DELRSVFRLTKNKFDEIAAMGLPNTELKFLSMGMSGSYKVAVQEGTNLVRLGTRIFGPRP
>Mature_220_residues
MYEDITRNIRDILAELPPDVTLEAAVKKRQPAEILAAIEAGVKIIGHNYLSEAEQTYPLIGEKVEWHFIGKLQSNKCKKI
VRLFSVVETVDSFEIASELNRRAAEIDKVLSVFIEINSGREEQKSGVLPEDTVELAKRLSGLSNLRLSGLMTMGPALEDP
DELRSVFRLTKNKFDEIAAMGLPNTELKFLSMGMSGSYKVAVQEGTNLVRLGTRIFGPRP

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=237, Percent_Identity=32.9113924050633, Blast_Score=94, Evalue=8e-20,
Organism=Escherichia coli, GI1789321, Length=208, Percent_Identity=36.5384615384615, Blast_Score=110, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17533025, Length=212, Percent_Identity=29.7169811320755, Blast_Score=82, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6319435, Length=208, Percent_Identity=37.9807692307692, Blast_Score=107, Evalue=2e-24,
Organism=Drosophila melanogaster, GI45550861, Length=240, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24489; Mature: 24489

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYEDITRNIRDILAELPPDVTLEAAVKKRQPAEILAAIEAGVKIIGHNYLSEAEQTYPLI
CCHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GEKVEWHFIGKLQSNKCKKIVRLFSVVETVDSFEIASELNRRAAEIDKVLSVFIEINSGR
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EEQKSGVLPEDTVELAKRLSGLSNLRLSGLMTMGPALEDPDELRSVFRLTKNKFDEIAAM
CHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GLPNTELKFLSMGMSGSYKVAVQEGTNLVRLGTRIFGPRP
CCCCCCHHHEEECCCCCEEEEEECCCCEEEHHHHHCCCCC
>Mature Secondary Structure
MYEDITRNIRDILAELPPDVTLEAAVKKRQPAEILAAIEAGVKIIGHNYLSEAEQTYPLI
CCHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GEKVEWHFIGKLQSNKCKKIVRLFSVVETVDSFEIASELNRRAAEIDKVLSVFIEINSGR
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
EEQKSGVLPEDTVELAKRLSGLSNLRLSGLMTMGPALEDPDELRSVFRLTKNKFDEIAAM
CHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GLPNTELKFLSMGMSGSYKVAVQEGTNLVRLGTRIFGPRP
CCCCCCHHHEEECCCCCEEEEEECCCCEEEHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]