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The map label for this gene is yfiK [H]

Identifier: 57233739

GI number: 57233739

Start: 1382385

End: 1383044

Strand: Direct

Name: yfiK [H]

Synonym: DET1531

Alternate gene names: 57233739

Gene position: 1382385-1383044 (Clockwise)

Preceding gene: 57233740

Following gene: 57233734

Centisome position: 94.06

GC content: 42.12

Gene sequence:

>660_bases
ATGCTTGAGAGTAAGATAAAAGTACTGATATGTGATGACCATGACATAGTTTGTCAGGGGTTAGTAAATATTATTTCCTG
CGAAGCTGATTTGGAAATAGTGGGGTGCGCGGCCAATCTAAGTTCAGCTTTGACCATGATAAGAGAATTAAAACCGGATG
TTGTCCTGGCTGATATCCGCCTTGGAGATGAAAACGGATTTGACCTGATAAAACAAAGCCACCGGGCGGGGTTCAAAATA
CCCTTTATCATGATTACAGGGTTTAAAAACGAATTTTACGTATCCAAGGCCATAGAAAACGGGGCAGCCGGACTGCTATC
CAAAGAAAGCCCCGGCAGAGTAATAGTTAATTCCATCCGCCTGACTTTTGACGGCAACAGTGTCTGGCCGATGGAATTAT
TAAAAAACACTTATAACAGTCTGTCCATATCACATTACGCATCAGATACAGATACCAATCTGGCTGTGCCTAACTTCACA
CCGCGGGAAAAAGAGATAATTAAATTTCTGCTGAAGGGCAATACCAATAAAGCCATTGCCCATGAACTGGGTTTATCTGA
TGTTACCGTGAAAAAGAGCCTTAAAAATATTATGACCAAACTCCATGTTGATAACCGGATGAAACTGGCAATGGTCATAA
GCAGGCTTAGCCTGGACTAG

Upstream 100 bases:

>100_bases
GACGGGCCGAACTGATGGGCGGCAGTTTCAATATAGAAAGTGAGATAGGTAAAGGTACATCTATCGAAGTTTTTATCCCG
TTTTCGGTAGGGTAGGGAAA

Downstream 100 bases:

>100_bases
CAAAATGCATTTCCCGACCTGCCTGAAATGCCAGCCCGGTTTACACGGATATTCCGTCCCGGCTTTGCCGCCGCTATAAA
GACAGTTATCCCCTTAAGCC

Product: LuxR family DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MLESKIKVLICDDHDIVCQGLVNIISCEADLEIVGCAANLSSALTMIRELKPDVVLADIRLGDENGFDLIKQSHRAGFKI
PFIMITGFKNEFYVSKAIENGAAGLLSKESPGRVIVNSIRLTFDGNSVWPMELLKNTYNSLSISHYASDTDTNLAVPNFT
PREKEIIKFLLKGNTNKAIAHELGLSDVTVKKSLKNIMTKLHVDNRMKLAMVISRLSLD

Sequences:

>Translated_219_residues
MLESKIKVLICDDHDIVCQGLVNIISCEADLEIVGCAANLSSALTMIRELKPDVVLADIRLGDENGFDLIKQSHRAGFKI
PFIMITGFKNEFYVSKAIENGAAGLLSKESPGRVIVNSIRLTFDGNSVWPMELLKNTYNSLSISHYASDTDTNLAVPNFT
PREKEIIKFLLKGNTNKAIAHELGLSDVTVKKSLKNIMTKLHVDNRMKLAMVISRLSLD
>Mature_219_residues
MLESKIKVLICDDHDIVCQGLVNIISCEADLEIVGCAANLSSALTMIRELKPDVVLADIRLGDENGFDLIKQSHRAGFKI
PFIMITGFKNEFYVSKAIENGAAGLLSKESPGRVIVNSIRLTFDGNSVWPMELLKNTYNSLSISHYASDTDTNLAVPNFT
PREKEIIKFLLKGNTNKAIAHELGLSDVTVKKSLKNIMTKLHVDNRMKLAMVISRLSLD

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=208, Percent_Identity=27.4038461538462, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1786747, Length=194, Percent_Identity=26.2886597938144, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790102, Length=206, Percent_Identity=29.6116504854369, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788222, Length=213, Percent_Identity=25.3521126760563, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788712, Length=207, Percent_Identity=23.1884057971014, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787473, Length=184, Percent_Identity=26.6304347826087, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24220; Mature: 24220

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLESKIKVLICDDHDIVCQGLVNIISCEADLEIVGCAANLSSALTMIRELKPDVVLADIR
CCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEE
LGDENGFDLIKQSHRAGFKIPFIMITGFKNEFYVSKAIENGAAGLLSKESPGRVIVNSIR
ECCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEHHHHCCCCCCCCCCCCCCEEEEEEEE
LTFDGNSVWPMELLKNTYNSLSISHYASDTDTNLAVPNFTPREKEIIKFLLKGNTNKAIA
EEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCEECCCCCCCHHHHHHHHHCCCCCHHHH
HELGLSDVTVKKSLKNIMTKLHVDNRMKLAMVISRLSLD
HHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MLESKIKVLICDDHDIVCQGLVNIISCEADLEIVGCAANLSSALTMIRELKPDVVLADIR
CCCCCEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEEE
LGDENGFDLIKQSHRAGFKIPFIMITGFKNEFYVSKAIENGAAGLLSKESPGRVIVNSIR
ECCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEHHHHCCCCCCCCCCCCCCEEEEEEEE
LTFDGNSVWPMELLKNTYNSLSISHYASDTDTNLAVPNFTPREKEIIKFLLKGNTNKAIA
EEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCEECCCCCCCHHHHHHHHHCCCCCHHHH
HELGLSDVTVKKSLKNIMTKLHVDNRMKLAMVISRLSLD
HHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]