Click here to switch to the map view.

The map label for this gene is ymdB [H]

Identifier: 57233606

GI number: 57233606

Start: 1442306

End: 1443076

Strand: Direct

Name: ymdB [H]

Synonym: DET1609

Alternate gene names: 57233606

Gene position: 1442306-1443076 (Clockwise)

Preceding gene: 57233607

Following gene: 57233605

Centisome position: 98.13

GC content: 53.44

Gene sequence:

>771_bases
ATGAAGATACTGGTAATCGGTGATGTCATCGGCAAGCCGGGGCGGGATGCCCTGCGGGATATCTTGCCGGGACTGAAACA
GGAATACAAGATAGATTTTACCATTGTAAACGGAGAAAATACGGCCGGGGGGATTGGCATAACCCCGGCCACTGCCCAGG
ACCTGATTTCGGCCGGGGCAGACGTAATCACCACCGGCAACCACGTCTGGAAGCACCGTGACATAGCCACGGTGATGGAC
GAGGAGAGCCTGCCGGTTATCCGCCCTTTAAACTACCCTCCGGGCGTACCCGGACAGGGTTATGTCCTTAAAGACAAGGT
TTTAGTGGTAAACCTGATGGGGCGTACCTTTATGTACGATATAGACTGCCCCTTCCGCAGTATTGATGCCCTGCTGTGCA
AACTGAATTTCAAACCGGCTGCCATTATTGTGGATTTCCATGCCGAAGCCACCTCTGAAAAAATGGCGCTGGGTTTCTAT
CTGGACGGGAGGGTAAGTGCCGTTCTTGGCACCCATACCCATGTGGCCACCTGTGATACCCGTTTGCTGCCCAAAAACAC
CGCCTATGTCAGTGATATAGGCATGGTAGGGCCTATTGATTCCATAATAGGGGACGAACCGGATGCGGTTATCCAGCGTT
TCCTGACCGGCATACCCGGCCGCCTGAGTGTAGCCCAGGGCAGGGTCATGCTGAATGCCGTGGTAGTCACCGTAAATACC
AAAACCGGACTGGCCACAGGTATAGAACGCATTTACAGGGAGATAAGCTAA

Upstream 100 bases:

>100_bases
TCAAGAAGATTGAAGACGGGCTGGAGTACCCCGGACAGATTAAGGTTACTGTTATCCGGGAAACCCGGTCTGTAGACTTT
GCCAAGTAGGGCAGGTAGTA

Downstream 100 bases:

>100_bases
ACATGTCTTCCAAAGTAGATTTGCATATCCACACCACCGTTTCAGACGGTGTCCACTCACCAGAGAATATTGTTGCCAAA
GCCGCCAAAGTCAATATGGA

Product: Ser/Thr protein phosphatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKILVIGDVIGKPGRDALRDILPGLKQEYKIDFTIVNGENTAGGIGITPATAQDLISAGADVITTGNHVWKHRDIATVMD
EESLPVIRPLNYPPGVPGQGYVLKDKVLVVNLMGRTFMYDIDCPFRSIDALLCKLNFKPAAIIVDFHAEATSEKMALGFY
LDGRVSAVLGTHTHVATCDTRLLPKNTAYVSDIGMVGPIDSIIGDEPDAVIQRFLTGIPGRLSVAQGRVMLNAVVVTVNT
KTGLATGIERIYREIS

Sequences:

>Translated_256_residues
MKILVIGDVIGKPGRDALRDILPGLKQEYKIDFTIVNGENTAGGIGITPATAQDLISAGADVITTGNHVWKHRDIATVMD
EESLPVIRPLNYPPGVPGQGYVLKDKVLVVNLMGRTFMYDIDCPFRSIDALLCKLNFKPAAIIVDFHAEATSEKMALGFY
LDGRVSAVLGTHTHVATCDTRLLPKNTAYVSDIGMVGPIDSIIGDEPDAVIQRFLTGIPGRLSVAQGRVMLNAVVVTVNT
KTGLATGIERIYREIS
>Mature_256_residues
MKILVIGDVIGKPGRDALRDILPGLKQEYKIDFTIVNGENTAGGIGITPATAQDLISAGADVITTGNHVWKHRDIATVMD
EESLPVIRPLNYPPGVPGQGYVLKDKVLVVNLMGRTFMYDIDCPFRSIDALLCKLNFKPAAIIVDFHAEATSEKMALGFY
LDGRVSAVLGTHTHVATCDTRLLPKNTAYVSDIGMVGPIDSIIGDEPDAVIQRFLTGIPGRLSVAQGRVMLNAVVVTVNT
KTGLATGIERIYREIS

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27584; Mature: 27584

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILVIGDVIGKPGRDALRDILPGLKQEYKIDFTIVNGENTAGGIGITPATAQDLISAGA
CEEEEEECCCCCCCHHHHHHHHHCCCHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC
DVITTGNHVWKHRDIATVMDEESLPVIRPLNYPPGVPGQGYVLKDKVLVVNLMGRTFMYD
CEEECCCEEEECCCHHHHHCCCCCCEEEECCCCCCCCCCCEEEECCEEEEEECCCEEEEE
IDCPFRSIDALLCKLNFKPAAIIVDFHAEATSEKMALGFYLDGRVSAVLGTHTHVATCDT
CCCCHHHHHHHHEECCCCCEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCEEEECCC
RLLPKNTAYVSDIGMVGPIDSIIGDEPDAVIQRFLTGIPGRLSVAQGRVMLNAVVVTVNT
CCCCCCCCEEECCCCCCCHHHHHCCCHHHHHHHHHHCCCCCEEHHCCEEEEEEEEEEEEC
KTGLATGIERIYREIS
CCCHHHHHHHHHHHCC
>Mature Secondary Structure
MKILVIGDVIGKPGRDALRDILPGLKQEYKIDFTIVNGENTAGGIGITPATAQDLISAGA
CEEEEEECCCCCCCHHHHHHHHHCCCHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC
DVITTGNHVWKHRDIATVMDEESLPVIRPLNYPPGVPGQGYVLKDKVLVVNLMGRTFMYD
CEEECCCEEEECCCHHHHHCCCCCCEEEECCCCCCCCCCCEEEECCEEEEEECCCEEEEE
IDCPFRSIDALLCKLNFKPAAIIVDFHAEATSEKMALGFYLDGRVSAVLGTHTHVATCDT
CCCCHHHHHHHHEECCCCCEEEEEEECCCCCCCCEEEEEEECCEEEEEEECCCEEEECCC
RLLPKNTAYVSDIGMVGPIDSIIGDEPDAVIQRFLTGIPGRLSVAQGRVMLNAVVVTVNT
CCCCCCCCEEECCCCCCCHHHHHCCCHHHHHHHHHHCCCCCEEHHCCEEEEEEEEEEEEC
KTGLATGIERIYREIS
CCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]