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The map label for this gene is ssb2 [H]

Identifier: 38234757

GI number: 38234757

Start: 2307893

End: 2308408

Strand: Direct

Name: ssb2 [H]

Synonym: DIP2216

Alternate gene names: 38234757

Gene position: 2307893-2308408 (Clockwise)

Preceding gene: 38234756

Following gene: 38234758

Centisome position: 92.74

GC content: 54.84

Gene sequence:

>516_bases
ATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGT
AGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGG
TTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTC
ACCGGGCGTTTGCGTCAACGCTCATATGAAACCCGTGAGGGTGAAAAGTGCACTGTGATGGAGCTAGAAGCCGATGAGGT
TGGTCCATCGTTGCGTTACGCATCTGCGAGTGTCATGCGGAATGAGCGTAATTCCGGCGGGAATGGGGTTGGTTCCCAGC
CGTCGACCGGCGGTTTTGGTGGACAGGTGTCACAACCTCAGTCTGGTGGTCAGTCTCAGGGTAGTGACGGGTGGAATAAT
CCAGCGCCTCTTGGTGATGATAACCCGCCGTGGTGA

Upstream 100 bases:

>100_bases
GAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCAC
TAGATCAAAGGACAAAGAAA

Downstream 100 bases:

>100_bases
TCGGGTTATGATTCCGCTATGAGAAAAGATGATTTGAAAGAGGCTGCACTTGTTGCGATGCGGGAGTATTACGTTGCTCG
TGATGTTCTCGCGGAGAAGC

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MAQGEVNVTIVGNLVADPELRFTPNGVAVTSFRVASTSKKYDSRSNQWVDGDAVFLQCNIWHQAAENVAESLTKGMRVIV
TGRLRQRSYETREGEKCTVMELEADEVGPSLRYASASVMRNERNSGGNGVGSQPSTGGFGGQVSQPQSGGQSQGSDGWNN
PAPLGDDNPPW

Sequences:

>Translated_171_residues
MAQGEVNVTIVGNLVADPELRFTPNGVAVTSFRVASTSKKYDSRSNQWVDGDAVFLQCNIWHQAAENVAESLTKGMRVIV
TGRLRQRSYETREGEKCTVMELEADEVGPSLRYASASVMRNERNSGGNGVGSQPSTGGFGGQVSQPQSGGQSQGSDGWNN
PAPLGDDNPPW
>Mature_170_residues
AQGEVNVTIVGNLVADPELRFTPNGVAVTSFRVASTSKKYDSRSNQWVDGDAVFLQCNIWHQAAENVAESLTKGMRVIVT
GRLRQRSYETREGEKCTVMELEADEVGPSLRYASASVMRNERNSGGNGVGSQPSTGGFGGQVSQPQSGGQSQGSDGWNNP
APLGDDNPPW

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 18305; Mature: 18174

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGEVNVTIVGNLVADPELRFTPNGVAVTSFRVASTSKKYDSRSNQWVDGDAVFLQCNI
CCCCCEEEEEEECEEECCCEEECCCCEEEEEEEECCCCCCCCCCCCCEECCCEEEEEEEC
WHQAAENVAESLTKGMRVIVTGRLRQRSYETREGEKCTVMELEADEVGPSLRYASASVMR
HHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHH
NERNSGGNGVGSQPSTGGFGGQVSQPQSGGQSQGSDGWNNPAPLGDDNPPW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AQGEVNVTIVGNLVADPELRFTPNGVAVTSFRVASTSKKYDSRSNQWVDGDAVFLQCNI
CCCCEEEEEEECEEECCCEEECCCCEEEEEEEECCCCCCCCCCCCCEECCCEEEEEEEC
WHQAAENVAESLTKGMRVIVTGRLRQRSYETREGEKCTVMELEADEVGPSLRYASASVMR
HHHHHHHHHHHHHCCEEEEEECCHHHCCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHH
NERNSGGNGVGSQPSTGGFGGQVSQPQSGGQSQGSDGWNNPAPLGDDNPPW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12840036 [H]