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The map label for this gene is ycdC [C]

Identifier: 38234509

GI number: 38234509

Start: 1994922

End: 1995542

Strand: Direct

Name: ycdC [C]

Synonym: DIP1942

Alternate gene names: 38234509

Gene position: 1994922-1995542 (Clockwise)

Preceding gene: 38234508

Following gene: 38234510

Centisome position: 80.16

GC content: 50.56

Gene sequence:

>621_bases
ATGCGCACGAATAAGAAACAACAATTACTGGCAACCGCTATGGATATTGTGGAATCCGATGGGTTACAAGGACTCACCTA
TGATTCCCTGAGTACGGCTACTGGTACCTCAAAATCCGGATTGATCTATCATTTCCCGTCCCGGCGCGCACTAGAAGTCG
AGCTCAACAAATACTCTGCTAGCTTGTGGACCCAAGCGTTGGAGGACATTGCCGGCGCTCCCCCACAACAACTGGATTTA
CCGTTGCGTTTAAAAGCGATTGTGATCAATCAATCGACGTCAGCCCGACGCGCTGATTTATTTCTTACACTGCAGTCTCT
CCCAGATCCAGAGATTCGACGCATTTGGACAGATGCGTGGCAGCCTTGGTCAGAGGGTATTGCAGAAAATTCCGCAGCAT
TATTCATTCTCACGCTTGCCGACGGCCTCTGGACGAGCGATCACGTAAATCCCACCCCGTTGAGTGCCACGGAACGACAG
CTCATTGTGGAACAAGCGTGTGCTTTTATCGATTCCGTGCAATGGGACAGCGGTCGATTACCGGCACATGTCGATATTGT
TTTCCCCTCCTGCTCGTTCCGCAGCACTTCAGATTCTCTTTCTCCTTCAGGGATTGAGTAG

Upstream 100 bases:

>100_bases
GAGTCCTATGCCACCGTGATCTGGATAGCAGCCGCGATTGGGCTCACCTGCGCCTTAGCTACTGCATGGCTACTTCGCAA
CAACCCTAAGGAAACTGAAT

Downstream 100 bases:

>100_bases
AAGATTGCTAAGGTAATCGAGTCTGCAACTGGTTACACATTCAAGGAGTCCCCTCTTGTCCGCAGCTCCCGTCCATCCCG
TGGACGCAGTTCCCGCAGCG

Product: TetR family regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Regulator Protein TetR Family; Regulatory Protein

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MRTNKKQQLLATAMDIVESDGLQGLTYDSLSTATGTSKSGLIYHFPSRRALEVELNKYSASLWTQALEDIAGAPPQQLDL
PLRLKAIVINQSTSARRADLFLTLQSLPDPEIRRIWTDAWQPWSEGIAENSAALFILTLADGLWTSDHVNPTPLSATERQ
LIVEQACAFIDSVQWDSGRLPAHVDIVFPSCSFRSTSDSLSPSGIE

Sequences:

>Translated_206_residues
MRTNKKQQLLATAMDIVESDGLQGLTYDSLSTATGTSKSGLIYHFPSRRALEVELNKYSASLWTQALEDIAGAPPQQLDL
PLRLKAIVINQSTSARRADLFLTLQSLPDPEIRRIWTDAWQPWSEGIAENSAALFILTLADGLWTSDHVNPTPLSATERQ
LIVEQACAFIDSVQWDSGRLPAHVDIVFPSCSFRSTSDSLSPSGIE
>Mature_206_residues
MRTNKKQQLLATAMDIVESDGLQGLTYDSLSTATGTSKSGLIYHFPSRRALEVELNKYSASLWTQALEDIAGAPPQQLDL
PLRLKAIVINQSTSARRADLFLTLQSLPDPEIRRIWTDAWQPWSEGIAENSAALFILTLADGLWTSDHVNPTPLSATERQ
LIVEQACAFIDSVQWDSGRLPAHVDIVFPSCSFRSTSDSLSPSGIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22671; Mature: 22671

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTNKKQQLLATAMDIVESDGLQGLTYDSLSTATGTSKSGLIYHFPSRRALEVELNKYSA
CCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEECCCCEEEEEEECHHHH
SLWTQALEDIAGAPPQQLDLPLRLKAIVINQSTSARRADLFLTLQSLPDPEIRRIWTDAW
HHHHHHHHHHHCCCHHHCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHC
QPWSEGIAENSAALFILTLADGLWTSDHVNPTPLSATERQLIVEQACAFIDSVQWDSGRL
CCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
PAHVDIVFPSCSFRSTSDSLSPSGIE
CEEEEEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTNKKQQLLATAMDIVESDGLQGLTYDSLSTATGTSKSGLIYHFPSRRALEVELNKYSA
CCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCEEEECCCCEEEEEEECHHHH
SLWTQALEDIAGAPPQQLDLPLRLKAIVINQSTSARRADLFLTLQSLPDPEIRRIWTDAW
HHHHHHHHHHHCCCHHHCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHC
QPWSEGIAENSAALFILTLADGLWTSDHVNPTPLSATERQLIVEQACAFIDSVQWDSGRL
CCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
PAHVDIVFPSCSFRSTSDSLSPSGIE
CEEEEEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA