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The map label for this gene is rpmJ

Identifier: 38234442

GI number: 38234442

Start: 1917063

End: 1917185

Strand: Reverse

Name: rpmJ

Synonym: DIP1872

Alternate gene names: 38234442

Gene position: 1917185-1917063 (Counterclockwise)

Preceding gene: 38234444

Following gene: 38234439

Centisome position: 77.04

GC content: 55.28

Gene sequence:

>123_bases
ATGAAGGTCCGTAAGTCCCTTCGGTCGCTGAAGAACAAGCCGGGCGCTCAGGTTGTGCGTCGTCGCGGCAAGGTCTATGT
GATCAACAAGAAAGACCCACGTTTCAAGGCTCGTCAGGGCTAA

Upstream 100 bases:

>100_bases
ATAGTATTGTCCCTCGTGTCATGGCAGACTTTGTCGGAGTCTCGCCGTCGTAAACTGTAAAGCCCGTTCAAGGCTTTCGT
GGAGAAGAAAGGAGCGCCCG

Downstream 100 bases:

>100_bases
TTCGTGTTATAACTTCAAAGACCGTCACCTTTCGGTGGCGGTCTTTTTGTTATCTCTGCAATGGGCCCCTATTCCGCTTT
GATTCGAGTGATCACGTTTT

Product: 50S ribosomal protein L36

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 40; Mature: 40

Protein sequence:

>40_residues
MKVRKSLRSLKNKPGAQVVRRRGKVYVINKKDPRFKARQG

Sequences:

>Translated_40_residues
MKVRKSLRSLKNKPGAQVVRRRGKVYVINKKDPRFKARQG
>Mature_40_residues
MKVRKSLRSLKNKPGAQVVRRRGKVYVINKKDPRFKARQG

Specific function: Unknown

COG id: COG0257

COG function: function code J; Ribosomal protein L36

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L36P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL36_CORDI (Q6NFL5)

Other databases:

- EMBL:   BX248359
- RefSeq:   NP_940209.1
- ProteinModelPortal:   Q6NFL5
- SMR:   Q6NFL5
- GeneID:   2649247
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1872
- NMPDR:   fig|257309.1.peg.1800
- HOGENOM:   HBG734088
- ProtClustDB:   PRK00831
- BioCyc:   CDIP257309:DIP1872-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00251
- InterPro:   IPR000473
- TIGRFAMs:   TIGR01022

Pfam domain/function: PF00444 Ribosomal_L36; SSF57840 Ribosomal_L36

EC number: NA

Molecular weight: Translated: 4695; Mature: 4695

Theoretical pI: Translated: 12.66; Mature: 12.66

Prosite motif: PS00828 RIBOSOMAL_L36

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVRKSLRSLKNKPGAQVVRRRGKVYVINKKDPRFKARQG
CCHHHHHHHHCCCCCHHHHHHCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure
MKVRKSLRSLKNKPGAQVVRRRGKVYVINKKDPRFKARQG
CCHHHHHHHHCCCCCHHHHHHCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910