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The map label for this gene is xerD [H]

Identifier: 38234408

GI number: 38234408

Start: 1880040

End: 1880855

Strand: Reverse

Name: xerD [H]

Synonym: DIP1837

Alternate gene names: 38234408

Gene position: 1880855-1880040 (Counterclockwise)

Preceding gene: 38234409

Following gene: 38234398

Centisome position: 75.58

GC content: 58.46

Gene sequence:

>816_bases
ATGAGTAACATTAGTCACACGCACACCATTGCGGATTATCAAGAGCACCTACTAGCGGGCGGACGTGCCAGAGGAACGAT
TCATGTGCGGATAAGTCATATTTCACGGTGCTTGACGTTTATCGATAAGCCGCTATGGGCGGTGACTACTGGCGACATAG
AGCGGTGGCTAGCGGCGGGGGAGTGGGGGCCAGCGGCTCGCAAGAGCGCTAGAACTAGCGTTCGTGTGTTCTTCGCATGG
GCTGTGCGTGAGGGGCTAATCGAGACAAACCCCGCGATAACGATTATTCCCGTCCCACAAGTTCGGTCGGTTCCTCGTCC
TTGTCCCGATGCGTTGATTAGCGATGCTATGAAGGTCGCGGCGCCGCGTGTGCGCCTAGCGATTGAGATCATGGCAACCT
GTGGCCTACGCCGTGATGAATGCGCGAGGGTGCGGGCGGGGGATGTTGAGCCAGTTGGGCAAGGCTGGATACTGAGGGTT
CGCGGTAAAGGTGGGCATGAGCGGCTAATACCGTGCCCACCGCACTTAGCGCGGCGGATCGCGGCGGCACAAGGGTGGGT
GTTTCCGGGTGGAGCGAATGGGCATGTGAGCGCGGGGTGGCTTGGCAAGCTCATTAGTAGGGCGCTTCCTGGAGCTTGGA
CACCGCATAAAATTAGACACCGCTATGCCACCGTGGCTTATGGGGATACCTACGACTTGCGAGCGGTGCAAGAATTGTTG
GGCCATGCGAGCGTTGCCACTACTCAGATTTACACGGCCGTGAGTGATACCTCTATGCGGTCAGCTGCGCGTGCTGCGTG
GACGATTGCGGCTTAG

Upstream 100 bases:

>100_bases
TGCGACTGTATATCATTTCGGGGAAGGACGTCGCGGGGGTAGTGATCGGGTGGCTGCATAGATTTTGCACGCCTATTGGA
ACATGTAATCATTTAACAAC

Downstream 100 bases:

>100_bases
AACTCCCTATGGGGATACAATACGGTCCCAGAACACTGGGCATTCCGGGAATAACCCTGAATTGTGATCTTATCCTCACC
AACTTTCGCAACACCCACAC

Product: putative phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MSNISHTHTIADYQEHLLAGGRARGTIHVRISHISRCLTFIDKPLWAVTTGDIERWLAAGEWGPAARKSARTSVRVFFAW
AVREGLIETNPAITIIPVPQVRSVPRPCPDALISDAMKVAAPRVRLAIEIMATCGLRRDECARVRAGDVEPVGQGWILRV
RGKGGHERLIPCPPHLARRIAAAQGWVFPGGANGHVSAGWLGKLISRALPGAWTPHKIRHRYATVAYGDTYDLRAVQELL
GHASVATTQIYTAVSDTSMRSAARAAWTIAA

Sequences:

>Translated_271_residues
MSNISHTHTIADYQEHLLAGGRARGTIHVRISHISRCLTFIDKPLWAVTTGDIERWLAAGEWGPAARKSARTSVRVFFAW
AVREGLIETNPAITIIPVPQVRSVPRPCPDALISDAMKVAAPRVRLAIEIMATCGLRRDECARVRAGDVEPVGQGWILRV
RGKGGHERLIPCPPHLARRIAAAQGWVFPGGANGHVSAGWLGKLISRALPGAWTPHKIRHRYATVAYGDTYDLRAVQELL
GHASVATTQIYTAVSDTSMRSAARAAWTIAA
>Mature_270_residues
SNISHTHTIADYQEHLLAGGRARGTIHVRISHISRCLTFIDKPLWAVTTGDIERWLAAGEWGPAARKSARTSVRVFFAWA
VREGLIETNPAITIIPVPQVRSVPRPCPDALISDAMKVAAPRVRLAIEIMATCGLRRDECARVRAGDVEPVGQGWILRVR
GKGGHERLIPCPPHLARRIAAAQGWVFPGGANGHVSAGWLGKLISRALPGAWTPHKIRHRYATVAYGDTYDLRAVQELLG
HASVATTQIYTAVSDTSMRSAARAAWTIAA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=223, Percent_Identity=30.4932735426009, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 29487; Mature: 29356

Theoretical pI: Translated: 10.85; Mature: 10.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNISHTHTIADYQEHLLAGGRARGTIHVRISHISRCLTFIDKPLWAVTTGDIERWLAAG
CCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCCEEEECCHHHHHHHCC
EWGPAARKSARTSVRVFFAWAVREGLIETNPAITIIPVPQVRSVPRPCPDALISDAMKVA
CCCHHHHHHHCCCEEEEEEEHHHHCCCCCCCCEEEEECCHHCCCCCCCHHHHHHHHHHHH
APRVRLAIEIMATCGLRRDECARVRAGDVEPVGQGWILRVRGKGGHERLIPCPPHLARRI
CCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHH
AAAQGWVFPGGANGHVSAGWLGKLISRALPGAWTPHKIRHRYATVAYGDTYDLRAVQELL
HHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHEEEEEECCCHHHHHHHHHH
GHASVATTQIYTAVSDTSMRSAARAAWTIAA
CCCHHHHHHHHHHHCCHHHHHHHHHEEEECC
>Mature Secondary Structure 
SNISHTHTIADYQEHLLAGGRARGTIHVRISHISRCLTFIDKPLWAVTTGDIERWLAAG
CCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCCEEEECCHHHHHHHCC
EWGPAARKSARTSVRVFFAWAVREGLIETNPAITIIPVPQVRSVPRPCPDALISDAMKVA
CCCHHHHHHHCCCEEEEEEEHHHHCCCCCCCCEEEEECCHHCCCCCCCHHHHHHHHHHHH
APRVRLAIEIMATCGLRRDECARVRAGDVEPVGQGWILRVRGKGGHERLIPCPPHLARRI
CCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHH
AAAQGWVFPGGANGHVSAGWLGKLISRALPGAWTPHKIRHRYATVAYGDTYDLRAVQELL
HHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHEEEEEECCCHHHHHHHHHH
GHASVATTQIYTAVSDTSMRSAARAAWTIAA
CCCHHHHHHHHHHHCCHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA