Click here to switch to the map view.

The map label for this gene is ykuT [H]

Identifier: 38234370

GI number: 38234370

Start: 1848410

End: 1849426

Strand: Direct

Name: ykuT [H]

Synonym: DIP1799

Alternate gene names: 38234370

Gene position: 1848410-1849426 (Clockwise)

Preceding gene: 38234369

Following gene: 38234371

Centisome position: 74.27

GC content: 56.34

Gene sequence:

>1017_bases
ATGAATATTTTTGGTTTCTCAGGGGGTGGGCCGCTTCAGGTTCTCGCCCAAAATAAGTTGTCAGATGAGACGGAGTCTGC
GATCAACTCCACTGAGTCGTGGCTGCATAGCCCGATGGCTCAGGATTGGTTGATTGAACGCCCCATCAGAATTGCTTTGA
CGCTCGTTGTGGCCATCGTGTTGAACTGGGCGCTGCGCAAGGCGATTACCAAGGCTGCCGACGCCAACATTCGCAAACCT
CGGTTGGCGATCTCCAACCCGATTATCAAGCGCAAGCGCAACAACGCCGCGAGTGAGGCTCTCACTGCCACTCAGGAGCA
GCGTCGACAAGCCCGTATTCGTACCCTCGCCGCCGTGGGCCGCAGCGCTGTGTCGATTTTTGTGTGGGTCTGGGCTGCGC
TTGGCACTCTCAAGCTGATCGGCGTGGATGTTACTCCCCTGATCGCTTCTGCCGGAGTTGTTGGTGTGGCGTTGGGCTTT
GGCGCACAATCGCTGGTCAAGGACTTTCTTTCTGGTGTGTTCATGCTCATTGAGGATCAATACGGTGTGGGCGACACCAT
CGACGTGGGTGATGTCGTAGGCACGGTCGAAGACGTATCCCTTCGCCTGACCACCTTGCGTGATATCAACGGCACCCAGT
GGTTCGTGCGCAACGGCGAGATCCTGCGCGTGGGCAATTTCAGCCAAGAATATGCGGTAGCGATCATCAACGTGCCCATC
GCCTTGGACGAGAAGGCCTCCGATGCGATTGCTTTGATTGAGAAGTCCGTGGCCGATGAAGCACAGCTACAAGAAGTAGC
CGATGTACTTCTCGACGACCCCGTGGTCGACGGCGTGAACTCCGTGGGACTTGACCACATGGTTATCCGGACACGTGTGA
CTACCTTGCCGGATCAACAATGGTTTATTGAGCGTAAGATGCGCGCGCGTATTCTTACCGATCTGCAGCGTAACGGCATT
GACACCCCCTACCCCGAAGGCATTGGCGCTTATCGCCGCCTCGACGACGAAGAATAG

Upstream 100 bases:

>100_bases
GCTCAACCTACCTGGCCACACAGTAGCAATGCCCTAATTACCTGCATTTTTACCCGTGGTTACCCCCGCGTGTTGGTGTT
CTACGATACGGTGGAAACCG

Downstream 100 bases:

>100_bases
GATAAGCCACCATGAACACCCCTGCGTCTTTTTATGAGTCTGTTGGTGGCGAAGAAACCTTCCACCTCATCGTGCACCGT
TTTTACGAACGCATGCGTAA

Product: putative mechanosensitive ion channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MNIFGFSGGGPLQVLAQNKLSDETESAINSTESWLHSPMAQDWLIERPIRIALTLVVAIVLNWALRKAITKAADANIRKP
RLAISNPIIKRKRNNAASEALTATQEQRRQARIRTLAAVGRSAVSIFVWVWAALGTLKLIGVDVTPLIASAGVVGVALGF
GAQSLVKDFLSGVFMLIEDQYGVGDTIDVGDVVGTVEDVSLRLTTLRDINGTQWFVRNGEILRVGNFSQEYAVAIINVPI
ALDEKASDAIALIEKSVADEAQLQEVADVLLDDPVVDGVNSVGLDHMVIRTRVTTLPDQQWFIERKMRARILTDLQRNGI
DTPYPEGIGAYRRLDDEE

Sequences:

>Translated_338_residues
MNIFGFSGGGPLQVLAQNKLSDETESAINSTESWLHSPMAQDWLIERPIRIALTLVVAIVLNWALRKAITKAADANIRKP
RLAISNPIIKRKRNNAASEALTATQEQRRQARIRTLAAVGRSAVSIFVWVWAALGTLKLIGVDVTPLIASAGVVGVALGF
GAQSLVKDFLSGVFMLIEDQYGVGDTIDVGDVVGTVEDVSLRLTTLRDINGTQWFVRNGEILRVGNFSQEYAVAIINVPI
ALDEKASDAIALIEKSVADEAQLQEVADVLLDDPVVDGVNSVGLDHMVIRTRVTTLPDQQWFIERKMRARILTDLQRNGI
DTPYPEGIGAYRRLDDEE
>Mature_338_residues
MNIFGFSGGGPLQVLAQNKLSDETESAINSTESWLHSPMAQDWLIERPIRIALTLVVAIVLNWALRKAITKAADANIRKP
RLAISNPIIKRKRNNAASEALTATQEQRRQARIRTLAAVGRSAVSIFVWVWAALGTLKLIGVDVTPLIASAGVVGVALGF
GAQSLVKDFLSGVFMLIEDQYGVGDTIDVGDVVGTVEDVSLRLTTLRDINGTQWFVRNGEILRVGNFSQEYAVAIINVPI
ALDEKASDAIALIEKSVADEAQLQEVADVLLDDPVVDGVNSVGLDHMVIRTRVTTLPDQQWFIERKMRARILTDLQRNGI
DTPYPEGIGAYRRLDDEE

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=213, Percent_Identity=28.6384976525822, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 36978; Mature: 36978

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFGFSGGGPLQVLAQNKLSDETESAINSTESWLHSPMAQDWLIERPIRIALTLVVAIV
CEEECCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHH
LNWALRKAITKAADANIRKPRLAISNPIIKRKRNNAASEALTATQEQRRQARIRTLAAVG
HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RSAVSIFVWVWAALGTLKLIGVDVTPLIASAGVVGVALGFGAQSLVKDFLSGVFMLIEDQ
HHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHEEEEECC
YGVGDTIDVGDVVGTVEDVSLRLTTLRDINGTQWFVRNGEILRVGNFSQEYAVAIINVPI
CCCCCCCCHHHHHCCHHHHHEEEEEEECCCCCEEEEECCCEEEECCCCCCEEEEEEECCE
ALDEKASDAIALIEKSVADEAQLQEVADVLLDDPVVDGVNSVGLDHMVIRTRVTTLPDQQ
EECCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCHHHCCHHHHHHHHHHCCCCCHH
WFIERKMRARILTDLQRNGIDTPYPEGIGAYRRLDDEE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
>Mature Secondary Structure
MNIFGFSGGGPLQVLAQNKLSDETESAINSTESWLHSPMAQDWLIERPIRIALTLVVAIV
CEEECCCCCCCHHHEECCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHHH
LNWALRKAITKAADANIRKPRLAISNPIIKRKRNNAASEALTATQEQRRQARIRTLAAVG
HHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RSAVSIFVWVWAALGTLKLIGVDVTPLIASAGVVGVALGFGAQSLVKDFLSGVFMLIEDQ
HHHHHHHHHHHHHHHHHEEECCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHEEEEECC
YGVGDTIDVGDVVGTVEDVSLRLTTLRDINGTQWFVRNGEILRVGNFSQEYAVAIINVPI
CCCCCCCCHHHHHCCHHHHHEEEEEEECCCCCEEEEECCCEEEECCCCCCEEEEEEECCE
ALDEKASDAIALIEKSVADEAQLQEVADVLLDDPVVDGVNSVGLDHMVIRTRVTTLPDQQ
EECCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHCCHHHCCHHHHHHHHHHCCCCCHH
WFIERKMRARILTDLQRNGIDTPYPEGIGAYRRLDDEE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]