Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 38234359

GI number: 38234359

Start: 1834614

End: 1835366

Strand: Direct

Name: ycdC [C]

Synonym: DIP1788

Alternate gene names: 38234359

Gene position: 1834614-1835366 (Clockwise)

Preceding gene: 38234337

Following gene: 38234365

Centisome position: 73.72

GC content: 55.11

Gene sequence:

>753_bases
GTGAACGAATCTTCGACCCATGACTCAGTCGCAGACGACCCAACGGAAGTCTCCACCGACACCGTCCTTGACATCGCACT
CTCCCTATTTTCTGAGCTCGGATTCTCGGACGCCAAGCTAGAAGCAATTGCTAAAAAATCGGGCATGTCTAAGCGCATGA
TCCACTACCACTTCGGCGACAAACGAGGCCTGTACATCTGCTGCTTGGAAGAAGCAGTACGACGCCTGCGCCCTACCGCC
GAGGAAATGTATCTGGCCAGCGCTGTGCCCGTCGAGGGTGTACGCACCATCGTCGAGGCAGTATTCCACCGCTACGTCCA
GCACCCAGAAGCTGTGCGGATGCTGCAGATGGAAAACCTACACCACTACGGCAAAGTGGCAGAGGCCAGCCCACTGTCTG
ACCAATCAGCTATTACGCTACAGCTCGATCGTCTGCTGATGCTCGGCCAAGATGCCGGCGCATTCCGCCCAGGCATTTCC
GCGCAAGATGTTTTTACCCTGATTGCATCGATCGCAGTGTTCCGTATCAATTCTCGATCGACCACGCTGAACCTCTACGG
CATTGACATGATGAATGGCGACAACACCGACGGTATGCGTCGTATGGCAGTCGATACGGTGCTGGCGTTTTTGACGTCTA
ATTTAAAGAGCGCTGACGAGGATAGCTACCTCAGCCGCCCGTTGCTCAGCACTGTCACTGAACACGTGGATGAGGAGGGC
TCCTACGAAGTAGCTGCCGACCCCTTCTCTTAA

Upstream 100 bases:

>100_bases
ACAAAAGCACGGACTTTTGTAGTGAAGCAGAGAAAAGAATTTTTTAAGAGACAGATCAACGTTCATCTGCCTCATCCCCA
GGTCGCACAAGGAGCAGAAC

Downstream 100 bases:

>100_bases
AAAAAATTCTTTCCCCCTGTTGAGGAGAAGATAGCCTTAGGCTGTCTTCTCCTCTTCGTCTTTCTGGCTGTGCAAGATCA
TCTCGGGTTCCTGCAGCCCT

Product: TetR family regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNESSTHDSVADDPTEVSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGDKRGLYICCLEEAVRRLRPTA
EEMYLASAVPVEGVRTIVEAVFHRYVQHPEAVRMLQMENLHHYGKVAEASPLSDQSAITLQLDRLLMLGQDAGAFRPGIS
AQDVFTLIASIAVFRINSRSTTLNLYGIDMMNGDNTDGMRRMAVDTVLAFLTSNLKSADEDSYLSRPLLSTVTEHVDEEG
SYEVAADPFS

Sequences:

>Translated_250_residues
MNESSTHDSVADDPTEVSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGDKRGLYICCLEEAVRRLRPTA
EEMYLASAVPVEGVRTIVEAVFHRYVQHPEAVRMLQMENLHHYGKVAEASPLSDQSAITLQLDRLLMLGQDAGAFRPGIS
AQDVFTLIASIAVFRINSRSTTLNLYGIDMMNGDNTDGMRRMAVDTVLAFLTSNLKSADEDSYLSRPLLSTVTEHVDEEG
SYEVAADPFS
>Mature_250_residues
MNESSTHDSVADDPTEVSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGDKRGLYICCLEEAVRRLRPTA
EEMYLASAVPVEGVRTIVEAVFHRYVQHPEAVRMLQMENLHHYGKVAEASPLSDQSAITLQLDRLLMLGQDAGAFRPGIS
AQDVFTLIASIAVFRINSRSTTLNLYGIDMMNGDNTDGMRRMAVDTVLAFLTSNLKSADEDSYLSRPLLSTVTEHVDEEG
SYEVAADPFS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27615; Mature: 27615

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNESSTHDSVADDPTEVSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGD
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECC
KRGLYICCLEEAVRRLRPTAEEMYLASAVPVEGVRTIVEAVFHRYVQHPEAVRMLQMENL
CCCEEEEEHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HHYGKVAEASPLSDQSAITLQLDRLLMLGQDAGAFRPGISAQDVFTLIASIAVFRINSRS
HHHCCCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCC
TTLNLYGIDMMNGDNTDGMRRMAVDTVLAFLTSNLKSADEDSYLSRPLLSTVTEHVDEEG
EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
SYEVAADPFS
CEEEECCCCC
>Mature Secondary Structure
MNESSTHDSVADDPTEVSTDTVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGD
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEECC
KRGLYICCLEEAVRRLRPTAEEMYLASAVPVEGVRTIVEAVFHRYVQHPEAVRMLQMENL
CCCEEEEEHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
HHYGKVAEASPLSDQSAITLQLDRLLMLGQDAGAFRPGISAQDVFTLIASIAVFRINSRS
HHHCCCCCCCCCCCCCEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEECCCC
TTLNLYGIDMMNGDNTDGMRRMAVDTVLAFLTSNLKSADEDSYLSRPLLSTVTEHVDEEG
EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
SYEVAADPFS
CEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA