| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is cdr [H]
Identifier: 38234319
GI number: 38234319
Start: 1792489
End: 1794102
Strand: Direct
Name: cdr [H]
Synonym: DIP1748
Alternate gene names: 38234319
Gene position: 1792489-1794102 (Clockwise)
Preceding gene: 38234318
Following gene: 38234320
Centisome position: 72.03
GC content: 58.36
Gene sequence:
>1614_bases ATGACCACCACGATCATCGTCGGCGGCGTTGCCGGCGGCATGTCCACCGCAGCACGTCTACGTCGGCGCGACGAGGACAT GACCATCCTCGTATTCGAAGCTTCAAACCACGTATCCTTTGCCAACTGTGGCCTTCCCTACCACGTCAGTGGCGTAATCC CCGAGCGTTCCTCACTTCTGCTGCAAACGCCGGAGTCACTTGCAGCTAGGTTCAACATCGATGTGCGCGTTGACCATCTA GTTACCGCCATTAACCGCGAAGCTGGCAGCGTCTCCGTGAAAAACCTCGCCACCGGCGAGGTGAGCGAGCATCACTACGA TCACCTCGTGCTTTCTCCCGGCGCGCGCCCGATCTTGCCACCGCTTCCTGGCATCGAAAAAGCTCTGACGCTCCGCACCG TCGAAGACGTAGATACCATCATCGAACGCGTTGCTGGCGCTTCTTCATCAGCCATCATCGGCGGCGGTTTTATTGGCATC GAGCTGGCGGAAAACTTGGCACACCGGGGTATCGCCACCACGATCATCGAGCGTGGTCCACAGATCCTTGGCCCCCTCGA CATTGAGATGGCAGCGTTTGTGGAGCAGCGCCTTCGTGACAATGGAATCAGCGTGCGTACTAACGCCAACGCTGCGGCGA TCTCAGACACCGGCGTTGAGCTTGCCGACGGCTCCGTCACCGCCGATGTTGTCGTTGCGGCAGTTGGCGTAGCACCGGCA AGCGACCTTGCCCGTGCGGCAGGTCTAGCTGTTGGGGAACGCGGCGGTATCGTTGTCGATGACCAGCTGCGGACTAACGA CCCTCAGATCTTTGCGCTTGGCGATGCTGCTGAAAAACGCGATGCTATTTCCGGTGCCGACACTCTCGTGCCACTCGCAC AAACCGCTAACCGTCATGGCCGCTTGGTAGCGGACATCATCACTGGACGCGATGTGAAGCGCACCTCTACTTTGGGCACC GCCATCGTTGGGGTTTTCGGATTGGCAGCTGCCAGTGTTGGGTGGAGCGAAAAGCGTGCGGTAGCTGCGGGCAAGAACAT TCGCGTTATTCACACGCACCCAGCAAGTCATGCCGGTTACTATCCTGGCGCAGCACAACTGCACCTCAAGCTGGTCGTCG ACGCTGATACCGACGCTATTCTCGGCGCTCAGGCCGTTGGTGAAGACGGCGCGGACAAGCGTATCGACGTCATCGCCACG GCCATGCGTGCTGGTCTCAGCGCTACCGATCTCGCAGATCTCGAGCTGGCCTACTCCCCACAGTATGGTTCGGCAAAAGA TCCAGTGAACCTCATCGGCATGGTCAACGACAATATCCGCTCCGGTGAGCGCAGTGTGCAATGGCACGAGCTTGATGCTC AGATTGCCGATGGCTGGACCTTGGTAGATGTTCGCACCGCCGGTGAATTCGCCGCCGGCAATATTCCAGGTGCCATCAAT ATTCCTGTCGATGAGCTACGTGAACACCTCGACGAGCTACAGGGCAAGAATGTGCTGGTGCATTGTCAGGTTGGCCTAAG GGGCCACGTTGCCGCTACTCTTTTGACTAATAGCGGTATCAACGCCGCCAACCTCGACGGTGGTTATCTCACATGGAAAA CTGCCACCTCTTAA
Upstream 100 bases:
>100_bases ACAAGTCAAAGCCCAAGTACCTAAGGGACAGTGGTGCACCTGCAAAAAGCCACAGAAACAAGGACTATTCGCTTCCCTCT TCGGACGTTAAGGACCAACC
Downstream 100 bases:
>100_bases GGAGCGACGCCATGAAACTCTCGCCGGAAGAGTCTAAACCAGCCATCACGCGCCTCAAAAGGGCGAAAGGCCAGCTTGAA GCGGTGATCCGCATGCTGGA
Product: putative oxidase
Products: NA
Alternate protein names: CoA-disulfide reductase; CoADR [H]
Number of amino acids: Translated: 537; Mature: 536
Protein sequence:
>537_residues MTTTIIVGGVAGGMSTAARLRRRDEDMTILVFEASNHVSFANCGLPYHVSGVIPERSSLLLQTPESLAARFNIDVRVDHL VTAINREAGSVSVKNLATGEVSEHHYDHLVLSPGARPILPPLPGIEKALTLRTVEDVDTIIERVAGASSSAIIGGGFIGI ELAENLAHRGIATTIIERGPQILGPLDIEMAAFVEQRLRDNGISVRTNANAAAISDTGVELADGSVTADVVVAAVGVAPA SDLARAAGLAVGERGGIVVDDQLRTNDPQIFALGDAAEKRDAISGADTLVPLAQTANRHGRLVADIITGRDVKRTSTLGT AIVGVFGLAAASVGWSEKRAVAAGKNIRVIHTHPASHAGYYPGAAQLHLKLVVDADTDAILGAQAVGEDGADKRIDVIAT AMRAGLSATDLADLELAYSPQYGSAKDPVNLIGMVNDNIRSGERSVQWHELDAQIADGWTLVDVRTAGEFAAGNIPGAIN IPVDELREHLDELQGKNVLVHCQVGLRGHVAATLLTNSGINAANLDGGYLTWKTATS
Sequences:
>Translated_537_residues MTTTIIVGGVAGGMSTAARLRRRDEDMTILVFEASNHVSFANCGLPYHVSGVIPERSSLLLQTPESLAARFNIDVRVDHL VTAINREAGSVSVKNLATGEVSEHHYDHLVLSPGARPILPPLPGIEKALTLRTVEDVDTIIERVAGASSSAIIGGGFIGI ELAENLAHRGIATTIIERGPQILGPLDIEMAAFVEQRLRDNGISVRTNANAAAISDTGVELADGSVTADVVVAAVGVAPA SDLARAAGLAVGERGGIVVDDQLRTNDPQIFALGDAAEKRDAISGADTLVPLAQTANRHGRLVADIITGRDVKRTSTLGT AIVGVFGLAAASVGWSEKRAVAAGKNIRVIHTHPASHAGYYPGAAQLHLKLVVDADTDAILGAQAVGEDGADKRIDVIAT AMRAGLSATDLADLELAYSPQYGSAKDPVNLIGMVNDNIRSGERSVQWHELDAQIADGWTLVDVRTAGEFAAGNIPGAIN IPVDELREHLDELQGKNVLVHCQVGLRGHVAATLLTNSGINAANLDGGYLTWKTATS >Mature_536_residues TTTIIVGGVAGGMSTAARLRRRDEDMTILVFEASNHVSFANCGLPYHVSGVIPERSSLLLQTPESLAARFNIDVRVDHLV TAINREAGSVSVKNLATGEVSEHHYDHLVLSPGARPILPPLPGIEKALTLRTVEDVDTIIERVAGASSSAIIGGGFIGIE LAENLAHRGIATTIIERGPQILGPLDIEMAAFVEQRLRDNGISVRTNANAAAISDTGVELADGSVTADVVVAAVGVAPAS DLARAAGLAVGERGGIVVDDQLRTNDPQIFALGDAAEKRDAISGADTLVPLAQTANRHGRLVADIITGRDVKRTSTLGTA IVGVFGLAAASVGWSEKRAVAAGKNIRVIHTHPASHAGYYPGAAQLHLKLVVDADTDAILGAQAVGEDGADKRIDVIATA MRAGLSATDLADLELAYSPQYGSAKDPVNLIGMVNDNIRSGERSVQWHELDAQIADGWTLVDVRTAGEFAAGNIPGAINI PVDELREHLDELQGKNVLVHCQVGLRGHVAATLLTNSGINAANLDGGYLTWKTATS
Specific function: Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI21389617, Length=360, Percent_Identity=25.2777777777778, Blast_Score=93, Evalue=7e-19, Organism=Homo sapiens, GI226437568, Length=360, Percent_Identity=25.2777777777778, Blast_Score=92, Evalue=9e-19, Organism=Homo sapiens, GI65787454, Length=360, Percent_Identity=25.2777777777778, Blast_Score=92, Evalue=9e-19, Organism=Escherichia coli, GI1789065, Length=280, Percent_Identity=29.6428571428571, Blast_Score=110, Evalue=2e-25, Organism=Escherichia coli, GI1789765, Length=395, Percent_Identity=26.5822784810127, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI1788892, Length=288, Percent_Identity=30.2083333333333, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1789915, Length=317, Percent_Identity=26.813880126183, Blast_Score=82, Evalue=9e-17, Organism=Escherichia coli, GI87081717, Length=342, Percent_Identity=28.9473684210526, Blast_Score=80, Evalue=4e-16, Organism=Escherichia coli, GI1786307, Length=325, Percent_Identity=25.5384615384615, Blast_Score=69, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17559934, Length=260, Percent_Identity=26.9230769230769, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17557007, Length=321, Percent_Identity=25.5451713395639, Blast_Score=73, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017758 - InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.14 [H]
Molecular weight: Translated: 56047; Mature: 55916
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTIIVGGVAGGMSTAARLRRRDEDMTILVFEASNHVSFANCGLPYHVSGVIPERSSLL CCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCCEE LQTPESLAARFNIDVRVDHLVTAINREAGSVSVKNLATGEVSEHHYDHLVLSPGARPILP EECCHHHHHEEEEEEEHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCC PLPGIEKALTLRTVEDVDTIIERVAGASSSAIIGGGFIGIELAENLAHRGIATTIIERGP CCCCCCHHEEEHHHHHHHHHHHHHCCCCCCEEEECCEEHHHHHHHHHHCCHHHHHHHCCC QILGPLDIEMAAFVEQRLRDNGISVRTNANAAAISDTGVELADGSVTADVVVAAVGVAPA CCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCEEECCCCHHHHHHHHHCCCCH SDLARAAGLAVGERGGIVVDDQLRTNDPQIFALGDAAEKRDAISGADTLVPLAQTANRHG HHHHHHHCCEECCCCCEEEECCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHHCCCCC RLVADIITGRDVKRTSTLGTAIVGVFGLAAASVGWSEKRAVAAGKNIRVIHTHPASHAGY CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCCEEEEEECCCCCCCC YPGAAQLHLKLVVDADTDAILGAQAVGEDGADKRIDVIATAMRAGLSATDLADLELAYSP CCCCEEEEEEEEEECCCCCEECHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECC QYGSAKDPVNLIGMVNDNIRSGERSVQWHELDAQIADGWTLVDVRTAGEFAAGNIPGAIN CCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCEECCCEEEEEEEECCCCCCCCCCCEEE IPVDELREHLDELQGKNVLVHCQVGLRGHVAATLLTNSGINAANLDGGYLTWKTATS CCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCEEECCCCEEEEEECCC >Mature Secondary Structure TTTIIVGGVAGGMSTAARLRRRDEDMTILVFEASNHVSFANCGLPYHVSGVIPERSSLL CEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCCCEE LQTPESLAARFNIDVRVDHLVTAINREAGSVSVKNLATGEVSEHHYDHLVLSPGARPILP EECCHHHHHEEEEEEEHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCCC PLPGIEKALTLRTVEDVDTIIERVAGASSSAIIGGGFIGIELAENLAHRGIATTIIERGP CCCCCCHHEEEHHHHHHHHHHHHHCCCCCCEEEECCEEHHHHHHHHHHCCHHHHHHHCCC QILGPLDIEMAAFVEQRLRDNGISVRTNANAAAISDTGVELADGSVTADVVVAAVGVAPA CCCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCEEECCCCHHHHHHHHHCCCCH SDLARAAGLAVGERGGIVVDDQLRTNDPQIFALGDAAEKRDAISGADTLVPLAQTANRHG HHHHHHHCCEECCCCCEEEECCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHHHHCCCCC RLVADIITGRDVKRTSTLGTAIVGVFGLAAASVGWSEKRAVAAGKNIRVIHTHPASHAGY CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCCEEEEEECCCCCCCC YPGAAQLHLKLVVDADTDAILGAQAVGEDGADKRIDVIATAMRAGLSATDLADLELAYSP CCCCEEEEEEEEEECCCCCEECHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECC QYGSAKDPVNLIGMVNDNIRSGERSVQWHELDAQIADGWTLVDVRTAGEFAAGNIPGAIN CCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCEECCCEEEEEEEECCCCCCCCCCCEEE IPVDELREHLDELQGKNVLVHCQVGLRGHVAATLLTNSGINAANLDGGYLTWKTATS CCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCCCEEECCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA