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The map label for this gene is atpF

Identifier: 38233642

GI number: 38233642

Start: 1029340

End: 1029906

Strand: Direct

Name: atpF

Synonym: DIP1048

Alternate gene names: 38233642

Gene position: 1029340-1029906 (Clockwise)

Preceding gene: 38233641

Following gene: 38233643

Centisome position: 41.36

GC content: 55.91

Gene sequence:

>567_bases
ATGACGAACGTCATTAAATACCTCGCTGAAGGCGAGGCACTACCGCTGGAGGATCACCCTAGCGTGTTGCTCCCTGCGAG
CTACGACATCGTCTGGTCGCTCGTCGTGTTCATTATCGTCCTGATCCTCTTCTGGAAGTTCGTTCGTCCGAAGTATCAGG
AAGTCCTGACCGAACGTGAGGACCGGATTAAGGGTGGCATTCAGCGTGCAGAAGCTGCACAGGCTGAAGCAAAAGCTGCT
CTTGAGAAGTACAATGCTCAGCTCGCCGAGGCACGTGCCGAAGCAGCAGAGATCCGCGAAGAAGCTCGTGCAAAGGGCAA
GCAGATCGAAGCTGAAATGAAGGCAAAGGCCACCGAGGAGAGCAACCGCATCATCGAGTCCGGTGAGAAGCAATTGGCAG
CACAGCGCGAGCAAGTTGTCACTGAGCTTCGTCGCGAGATGGGCCAGAACTCGATCAGCCTTGCAGAGCGTCTGCTTGGA
GACCAGCTCTCCGATGACGTCAAGCGTTCCGGCACGATCGATAAGTTCTTGGCTGAGCTCGACACCGTGTCTCCCGCAGG
AAAGTGA

Upstream 100 bases:

>100_bases
CACCATGTTCCTTGGTATTGCATTCGTTGAGGCTCTCGCCCTCATTGGTCTGGTTGCAGGCTTCATCCTTTAATAACCGT
CCGACACGAAAGCCGAGATT

Downstream 100 bases:

>100_bases
GCACCATGCACGCAGCGAGCCGCGAAGCACTAGCACGCGTTACCTCTGACCTCGACAAGGCATTGTGGGAGGCCAAGGAA
AACGCTATCGCTACTGCAGC

Product: F0F1 ATP synthase subunit B

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(0) sector subunit b; ATPase subunit I; F-type ATPase subunit b; F-ATPase subunit b

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MTNVIKYLAEGEALPLEDHPSVLLPASYDIVWSLVVFIIVLILFWKFVRPKYQEVLTEREDRIKGGIQRAEAAQAEAKAA
LEKYNAQLAEARAEAAEIREEARAKGKQIEAEMKAKATEESNRIIESGEKQLAAQREQVVTELRREMGQNSISLAERLLG
DQLSDDVKRSGTIDKFLAELDTVSPAGK

Sequences:

>Translated_188_residues
MTNVIKYLAEGEALPLEDHPSVLLPASYDIVWSLVVFIIVLILFWKFVRPKYQEVLTEREDRIKGGIQRAEAAQAEAKAA
LEKYNAQLAEARAEAAEIREEARAKGKQIEAEMKAKATEESNRIIESGEKQLAAQREQVVTELRREMGQNSISLAERLLG
DQLSDDVKRSGTIDKFLAELDTVSPAGK
>Mature_187_residues
TNVIKYLAEGEALPLEDHPSVLLPASYDIVWSLVVFIIVLILFWKFVRPKYQEVLTEREDRIKGGIQRAEAAQAEAKAAL
EKYNAQLAEARAEAAEIREEARAKGKQIEAEMKAKATEESNRIIESGEKQLAAQREQVVTELRREMGQNSISLAERLLGD
QLSDDVKRSGTIDKFLAELDTVSPAGK

Specific function: Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)

COG id: COG0711

COG function: function code C; F0F1-type ATP synthase, subunit b

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase B chain family

Homologues:

Organism=Escherichia coli, GI1790174, Length=151, Percent_Identity=28.476821192053, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPF_CORDI (Q6NHT3)

Other databases:

- EMBL:   BX248356
- RefSeq:   NP_939409.1
- ProteinModelPortal:   Q6NHT3
- SMR:   Q6NHT3
- GeneID:   2650814
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1048
- NMPDR:   fig|257309.1.peg.1000
- HOGENOM:   HBG617328
- OMA:   LEKYNAQ
- ProtClustDB:   PRK05759
- BioCyc:   CDIP257309:DIP1048-MONOMER
- HAMAP:   MF_01398
- InterPro:   IPR002146
- InterPro:   IPR005864
- TIGRFAMs:   TIGR01144

Pfam domain/function: PF00430 ATP-synt_B

EC number: 3.6.3.14

Molecular weight: Translated: 21009; Mature: 20878

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x11e9db94)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNVIKYLAEGEALPLEDHPSVLLPASYDIVWSLVVFIIVLILFWKFVRPKYQEVLTERE
CHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
DRIKGGIQRAEAAQAEAKAALEKYNAQLAEARAEAAEIREEARAKGKQIEAEMKAKATEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNRIIESGEKQLAAQREQVVTELRREMGQNSISLAERLLGDQLSDDVKRSGTIDKFLAEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
DTVSPAGK
HCCCCCCH
>Mature Secondary Structure 
TNVIKYLAEGEALPLEDHPSVLLPASYDIVWSLVVFIIVLILFWKFVRPKYQEVLTERE
HHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
DRIKGGIQRAEAAQAEAKAALEKYNAQLAEARAEAAEIREEARAKGKQIEAEMKAKATEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SNRIIESGEKQLAAQREQVVTELRREMGQNSISLAERLLGDQLSDDVKRSGTIDKFLAEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
DTVSPAGK
HCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 14602910