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The map label for this gene is ywcA [H]

Identifier: 38233390

GI number: 38233390

Start: 771401

End: 773053

Strand: Direct

Name: ywcA [H]

Synonym: DIP0791

Alternate gene names: 38233390

Gene position: 771401-773053 (Clockwise)

Preceding gene: 38233389

Following gene: 38233391

Centisome position: 31.0

GC content: 53.36

Gene sequence:

>1653_bases
ATGAACATTTATACTTTGGCAGCTGATGCCCCAGGCTCTGCTGCCGGCAACCCAGTACTGAACATCATTGTGTTCATTGC
CTTTATCATGATCACGATGGCTGTGGTTCTTCGCGCTGGAAAATCCACCAACGAAGCATCGGATTTTTACACCGGTGGTG
GATCCTTCTCCGGAAAACAAAATGGCCTTGCTATCGCGGGCGACTACCTTTCGGCAGCATCATTTTTGGGCATTGTTGGT
GCTATTGCTCTCAGTGGCTACGACGGATTCTTGTACTCCATAGGATTCTTCGTTGCGTGGCTCGTAGCGCTACTCCTAGT
GGCTGAACCACTGCGTAACGTTGGTCGATTCACCATGGCAGATGTGCTGTCATTCCGTCTCAAGCAAAAGCCAGTTCGCG
TGGCGGCGGCGTTTGGCACTCTATTTGTTTCCTTGTTCTACCTCATTGCTCAAATGGCTGGTGCGGGTTCGCTGGTGTCG
GTGCTGCTCGATCTTCATGATCACTCGGCTCAAGCAATCGTTGTTGCTGTGGTGGGCGTCATCATGATCGTCTACGTGCT
CATCGGTGGTATGAAGGGCACAACGTATGTGCAGATGATCAAGGCCGTGCTTCTTGTTGGTGGTGTGACCAGCATGACGA
TCCTCGTGTTCTTCGCGGTCAAAGGTGGTTTCAGCCAGCTTTTCGACGCTGCCGTGCACACGCACTCCCAGTCGGATTAC
TTGGCAAAGAAGGGCTATGAGGCTTCTCAGATTTTGGAGCCAGGCCTAAAGTACGGAAAGTCGGAAACGTCGAAACTGGA
CTTCCTCTCGCTCGGTATTGCACTGGTTCTCGGTACTGCCGGTTTGCCACACGTGCTCATGCGCTTCTACACCGTTCCTA
CAGCTAAAGAGGCGCGCCGCTCGGTGGTGTGGGCCATCATCTTGATTGGCTCTTTCTACCTGATGACCCTCGTTTTGGGC
TTCGGTGCAGCAGCTCTAGTTGGCCCAGACCGCATTATGAAAGCCCCAGGAACTGCTAATGCTGCAGCACCTCTGCTGGC
ACTTGAACTCGCAGGTCCCGTCTTTATGGCACTGATTTCCGCAGTAGCCTTTGCTACGGTGCTCGCTGTGGTAGCAGGTC
TTGCCATTACCGCCTCCGCGTCTATTGCACACGATCTTTATGATGCAGTGCTCCGTGACGGCAAATCCACCGAGGAAGAG
CAGGTCCGCGTCTCTCGTATCACAGTGGTAGCCATCGGTGTAGCGGCCATCATTTTGGGAATCCTTGCGATGGAACAAAA
TGTAGCCTTCCTCGTCTCGCTTGCCTTCGCCATTGCTGCCTCGGCTAACTTGCCGACCATCTTGTACTCGCTGTATTGGA
AGCGGTTTAACACCACAGGCGCTGTGGCCTCTATTTACACCGGTTTGATCTCCGCACTGGTGCTCATCATCTTCTCGCCT
GCAGTATCCGGTTCCGAAACCTCGATGATTTCGGGTGCAGACTTCGCATGGTTCCCACTATCAAGCCCCGGCTTGGTATC
CATTCCGCTGGCTTTCATTGCCGGAATTGTGGGCACCTACCTTGGTCGTCCAGATAACCTCGATCATCTACAAGCAGAAA
TGGAAGTCCGTTCGCTTACCGGAGTAGGCGTTGAGGCTCCAGTGGATCACTAG

Upstream 100 bases:

>100_bases
TGTTACCACATTCATTATCACGTGGGTCTACATCAAATTTGCCAACAAAAACATCGAGCCACGCGCAGCGGCGATCCGCG
AGTCCATGGAAGGATAAGCA

Downstream 100 bases:

>100_bases
CCCCCGATAAGACAATCCCACTAAAGCTACCGTGACGAGTACACACCAGAGCTTGTCACCGTGTTCGGGGAAATCTGGTG
GTGTCCGGCGTGGATTATTC

Product: putative transport membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 550

Protein sequence:

>550_residues
MNIYTLAADAPGSAAGNPVLNIIVFIAFIMITMAVVLRAGKSTNEASDFYTGGGSFSGKQNGLAIAGDYLSAASFLGIVG
AIALSGYDGFLYSIGFFVAWLVALLLVAEPLRNVGRFTMADVLSFRLKQKPVRVAAAFGTLFVSLFYLIAQMAGAGSLVS
VLLDLHDHSAQAIVVAVVGVIMIVYVLIGGMKGTTYVQMIKAVLLVGGVTSMTILVFFAVKGGFSQLFDAAVHTHSQSDY
LAKKGYEASQILEPGLKYGKSETSKLDFLSLGIALVLGTAGLPHVLMRFYTVPTAKEARRSVVWAIILIGSFYLMTLVLG
FGAAALVGPDRIMKAPGTANAAAPLLALELAGPVFMALISAVAFATVLAVVAGLAITASASIAHDLYDAVLRDGKSTEEE
QVRVSRITVVAIGVAAIILGILAMEQNVAFLVSLAFAIAASANLPTILYSLYWKRFNTTGAVASIYTGLISALVLIIFSP
AVSGSETSMISGADFAWFPLSSPGLVSIPLAFIAGIVGTYLGRPDNLDHLQAEMEVRSLTGVGVEAPVDH

Sequences:

>Translated_550_residues
MNIYTLAADAPGSAAGNPVLNIIVFIAFIMITMAVVLRAGKSTNEASDFYTGGGSFSGKQNGLAIAGDYLSAASFLGIVG
AIALSGYDGFLYSIGFFVAWLVALLLVAEPLRNVGRFTMADVLSFRLKQKPVRVAAAFGTLFVSLFYLIAQMAGAGSLVS
VLLDLHDHSAQAIVVAVVGVIMIVYVLIGGMKGTTYVQMIKAVLLVGGVTSMTILVFFAVKGGFSQLFDAAVHTHSQSDY
LAKKGYEASQILEPGLKYGKSETSKLDFLSLGIALVLGTAGLPHVLMRFYTVPTAKEARRSVVWAIILIGSFYLMTLVLG
FGAAALVGPDRIMKAPGTANAAAPLLALELAGPVFMALISAVAFATVLAVVAGLAITASASIAHDLYDAVLRDGKSTEEE
QVRVSRITVVAIGVAAIILGILAMEQNVAFLVSLAFAIAASANLPTILYSLYWKRFNTTGAVASIYTGLISALVLIIFSP
AVSGSETSMISGADFAWFPLSSPGLVSIPLAFIAGIVGTYLGRPDNLDHLQAEMEVRSLTGVGVEAPVDH
>Mature_550_residues
MNIYTLAADAPGSAAGNPVLNIIVFIAFIMITMAVVLRAGKSTNEASDFYTGGGSFSGKQNGLAIAGDYLSAASFLGIVG
AIALSGYDGFLYSIGFFVAWLVALLLVAEPLRNVGRFTMADVLSFRLKQKPVRVAAAFGTLFVSLFYLIAQMAGAGSLVS
VLLDLHDHSAQAIVVAVVGVIMIVYVLIGGMKGTTYVQMIKAVLLVGGVTSMTILVFFAVKGGFSQLFDAAVHTHSQSDY
LAKKGYEASQILEPGLKYGKSETSKLDFLSLGIALVLGTAGLPHVLMRFYTVPTAKEARRSVVWAIILIGSFYLMTLVLG
FGAAALVGPDRIMKAPGTANAAAPLLALELAGPVFMALISAVAFATVLAVVAGLAITASASIAHDLYDAVLRDGKSTEEE
QVRVSRITVVAIGVAAIILGILAMEQNVAFLVSLAFAIAASANLPTILYSLYWKRFNTTGAVASIYTGLISALVLIIFSP
AVSGSETSMISGADFAWFPLSSPGLVSIPLAFIAGIVGTYLGRPDNLDHLQAEMEVRSLTGVGVEAPVDH

Specific function: Unknown

COG id: COG4147

COG function: function code R; Predicted symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

Organism=Escherichia coli, GI1790503, Length=558, Percent_Identity=46.7741935483871, Blast_Score=429, Evalue=1e-121,
Organism=Escherichia coli, GI1787251, Length=470, Percent_Identity=25.1063829787234, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734
- InterPro:   IPR018212
- InterPro:   IPR019900 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 57439; Mature: 57439

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]