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The map label for this gene is cspB [H]

Identifier: 38233375

GI number: 38233375

Start: 756260

End: 756649

Strand: Direct

Name: cspB [H]

Synonym: DIP0776

Alternate gene names: 38233375

Gene position: 756260-756649 (Clockwise)

Preceding gene: 38233373

Following gene: 38233378

Centisome position: 30.39

GC content: 54.36

Gene sequence:

>390_bases
GTGCCTCAAGGGAAGGTGCTTTGGTACGACGTTGATAAGGGATTCGGATTTGTGTCCAACCCCGAAGGAGACGACTGCTT
TGTCAGCAAGGACGTTTTGCCTCAAGGCGTACAGAAGCTAGAAAAAGGTCAGCGCGTTGAATTCGACTACGTTGCGCGTG
GTCGTGGTCCACAAGCGTTGCGCATCAAGGTCCTAGACACCCCTAGGCTTCGCCGCCCAGCACAACATAAGTACTCTGCC
GAAGAGCTCAACAGCATGATCTCTGATCTGGCTACGCTGCTGGAGATCAAAGTGCAGCCGTCGCTACGCGCCGGGCGATA
CCCCGACCGCAAAGAAGGCCGACAGGTTGCTAACATTTTGCGCGCTGTTGCCAAAGAACTCGATATGTAA

Upstream 100 bases:

>100_bases
GCACGACTATTAATTCCAGCCGTGGATCCAAGCCGGATCTCCTGCACCTTATTTAAGGTGCACTGGGCTCATGGGATCGT
AAAGAAGGGAGAGGAGTGCA

Downstream 100 bases:

>100_bases
CTTCCTTTGTGTGATTGAGAGGGTTACATATAGCAAGGGCGGGACATCCTCCTACAAACTGTAGGTACGATGTCCCGCCC
TTGCTATATAAGAGACAAAA

Product: cold shock protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MPQGKVLWYDVDKGFGFVSNPEGDDCFVSKDVLPQGVQKLEKGQRVEFDYVARGRGPQALRIKVLDTPRLRRPAQHKYSA
EELNSMISDLATLLEIKVQPSLRAGRYPDRKEGRQVANILRAVAKELDM

Sequences:

>Translated_129_residues
MPQGKVLWYDVDKGFGFVSNPEGDDCFVSKDVLPQGVQKLEKGQRVEFDYVARGRGPQALRIKVLDTPRLRRPAQHKYSA
EELNSMISDLATLLEIKVQPSLRAGRYPDRKEGRQVANILRAVAKELDM
>Mature_128_residues
PQGKVLWYDVDKGFGFVSNPEGDDCFVSKDVLPQGVQKLEKGQRVEFDYVARGRGPQALRIKVLDTPRLRRPAQHKYSAE
ELNSMISDLATLLEIKVQPSLRAGRYPDRKEGRQVANILRAVAKELDM

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 14612; Mature: 14481

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQGKVLWYDVDKGFGFVSNPEGDDCFVSKDVLPQGVQKLEKGQRVEFDYVARGRGPQAL
CCCCCEEEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCEEEEECCCCCCEE
RIKVLDTPRLRRPAQHKYSAEELNSMISDLATLLEIKVQPSLRAGRYPDRKEGRQVANIL
EEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
RAVAKELDM
HHHHHHHCC
>Mature Secondary Structure 
PQGKVLWYDVDKGFGFVSNPEGDDCFVSKDVLPQGVQKLEKGQRVEFDYVARGRGPQAL
CCCCEEEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCEEEEECCCCCCEE
RIKVLDTPRLRRPAQHKYSAEELNSMISDLATLLEIKVQPSLRAGRYPDRKEGRQVANIL
EEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
RAVAKELDM
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]