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The map label for this gene is lytR [H]

Identifier: 38233287

GI number: 38233287

Start: 655425

End: 656903

Strand: Reverse

Name: lytR [H]

Synonym: DIP0680

Alternate gene names: 38233287

Gene position: 656903-655425 (Counterclockwise)

Preceding gene: 38233292

Following gene: 38233286

Centisome position: 26.4

GC content: 54.09

Gene sequence:

>1479_bases
GTGCTGCTGTCCTTATTATCTGCCTTAGTGCTGATCGTCTCGGCAGCTGGTTATTTCACTGTTGGACGAATCGGCAACAC
GGTCGCTTCTGCCGGCAACCTCGTACTCGGCGGCGATAAAGGCATGAAAGAAGCTGCCGACGGCGCCACCGACATCCTGC
TTGTTGGCTCCGACTCGCGTACGGATGCCCAGGGTAATCCGCTCACTCCGGAAGAAATCGAGTTGTTGCACGCAGGCGAC
GAGGAAAACGACAACACCGACACCCTCATGGTTATTCGCGTGCCTAACGACGGCTCCTCTGCCACCGCGATCTCAATTCC
TCGTGACACCTATGTGCATGATGAAAACGTGGGCAACCTCAAGATCAATGGTGTCTACCGCGCCTACAAAAACCGCAAAG
CTTCCGAACTAGTCAATAGTGGGGAAAGCGATCAAAAGCACATTGACGAACTATCCAAGGAAGCTGGGCGCAAGGCTCTC
ATCTCTAGCATCTCCGATCTCACTGGTGTCACCGTTGACCATTACGCAGAAGTAGGCCTCCTCGGGTTCGTACTGCTCAC
CAATGCTGTTGGTGGCGTCGACGTTTGTCTTAACAACGACGTTTACGATGAGTTTTCTGGTGCAGACTTCAAAGCCGGCC
AACAAACCCTACGCGACGGTCAAGCTCTCGCATTCGTTCGCCAACGCCACGGTCTACCACGTGGTGACCTTGATCGTATT
GTTCGCCAGCAAGCGTTTATGGCATCGCTTGTTGCCAAAGTTCTTTCTTCGGGCACACTGACCAACCCATCCAAGCTCTC
CGATCTAGGTGAGGCAGTATCTCGCTCCGTGGTGATCGATAAAAACTGGGATGTGATGAGTTTTGCCAACCAACTCCAAA
ACTTGGCCGGTGGCAACGTTAAATTCAACACCATCCCCGTGACATCCATTGATGGCGTAGGCGATTATGGCGAATCCGTA
GTCACCGTGGATAAAAACCAAGTCCACCAATTCTTCGATCGCCTCCTCAACGGCAACAACGGCGAAGAAACCCCAACCTC
GGATAGCGAAGCACCGGCAGAAAACCCCCACACGTCCACCACTATCGACGTGCTCAATGCCACCAGCACCACCGGTCTTG
CTTCGCAAGTAGCAGGCCATCTCTCCGCAAAGCACTACACCATCGGCAACATCGGCAATGCATTAGAAGGCATGTACCAC
GAAAGCCAAATTGTTGCCGCCGACCCAAACAATGAAGCAGTCAAGGCTATTGCCGCCGAGCTCGGAGGCCTACCCATTAC
CCAGCGCAATGACCTAGATGCCGATTCCGTCGTCGTTGTTATCGCATCCGATTATTCTGGCCCAACCGGCGATGGCGCAG
AATCATCTGACTCTTCTAGTAGCACCACCACCGTTGGCAAGCCTGGCAGCGACGAAGGCGAAGCAATTGTCTCCCCTGAA
ATCGACGCCGGTGGGCAAGGACCTCGCTGCGTGAACTAG

Upstream 100 bases:

>100_bases
GCACCCCACAATGTCAGATAATTTTCGCCGTAACCGTGCGATCCAGGCACCACCACCAGCAGGCCCAACCACGGCACAGG
CAGGACCAAAACCTGTCAAA

Downstream 100 bases:

>100_bases
CATGAGCAGGCATGGAGTTACTAGCAAACATCCTTGCCACTGAACCCGCCGCCCCACGTGTCACCGTGTACAACGAAGAC
ACTGGGGCGCGTCTTGATTT

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MLLSLLSALVLIVSAAGYFTVGRIGNTVASAGNLVLGGDKGMKEAADGATDILLVGSDSRTDAQGNPLTPEEIELLHAGD
EENDNTDTLMVIRVPNDGSSATAISIPRDTYVHDENVGNLKINGVYRAYKNRKASELVNSGESDQKHIDELSKEAGRKAL
ISSISDLTGVTVDHYAEVGLLGFVLLTNAVGGVDVCLNNDVYDEFSGADFKAGQQTLRDGQALAFVRQRHGLPRGDLDRI
VRQQAFMASLVAKVLSSGTLTNPSKLSDLGEAVSRSVVIDKNWDVMSFANQLQNLAGGNVKFNTIPVTSIDGVGDYGESV
VTVDKNQVHQFFDRLLNGNNGEETPTSDSEAPAENPHTSTTIDVLNATSTTGLASQVAGHLSAKHYTIGNIGNALEGMYH
ESQIVAADPNNEAVKAIAAELGGLPITQRNDLDADSVVVVIASDYSGPTGDGAESSDSSSSTTTVGKPGSDEGEAIVSPE
IDAGGQGPRCVN

Sequences:

>Translated_492_residues
MLLSLLSALVLIVSAAGYFTVGRIGNTVASAGNLVLGGDKGMKEAADGATDILLVGSDSRTDAQGNPLTPEEIELLHAGD
EENDNTDTLMVIRVPNDGSSATAISIPRDTYVHDENVGNLKINGVYRAYKNRKASELVNSGESDQKHIDELSKEAGRKAL
ISSISDLTGVTVDHYAEVGLLGFVLLTNAVGGVDVCLNNDVYDEFSGADFKAGQQTLRDGQALAFVRQRHGLPRGDLDRI
VRQQAFMASLVAKVLSSGTLTNPSKLSDLGEAVSRSVVIDKNWDVMSFANQLQNLAGGNVKFNTIPVTSIDGVGDYGESV
VTVDKNQVHQFFDRLLNGNNGEETPTSDSEAPAENPHTSTTIDVLNATSTTGLASQVAGHLSAKHYTIGNIGNALEGMYH
ESQIVAADPNNEAVKAIAAELGGLPITQRNDLDADSVVVVIASDYSGPTGDGAESSDSSSSTTTVGKPGSDEGEAIVSPE
IDAGGQGPRCVN
>Mature_492_residues
MLLSLLSALVLIVSAAGYFTVGRIGNTVASAGNLVLGGDKGMKEAADGATDILLVGSDSRTDAQGNPLTPEEIELLHAGD
EENDNTDTLMVIRVPNDGSSATAISIPRDTYVHDENVGNLKINGVYRAYKNRKASELVNSGESDQKHIDELSKEAGRKAL
ISSISDLTGVTVDHYAEVGLLGFVLLTNAVGGVDVCLNNDVYDEFSGADFKAGQQTLRDGQALAFVRQRHGLPRGDLDRI
VRQQAFMASLVAKVLSSGTLTNPSKLSDLGEAVSRSVVIDKNWDVMSFANQLQNLAGGNVKFNTIPVTSIDGVGDYGESV
VTVDKNQVHQFFDRLLNGNNGEETPTSDSEAPAENPHTSTTIDVLNATSTTGLASQVAGHLSAKHYTIGNIGNALEGMYH
ESQIVAADPNNEAVKAIAAELGGLPITQRNDLDADSVVVVIASDYSGPTGDGAESSDSSSSTTTVGKPGSDEGEAIVSPE
IDAGGQGPRCVN

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 51440; Mature: 51440

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSLLSALVLIVSAAGYFTVGRIGNTVASAGNLVLGGDKGMKEAADGATDILLVGSDSR
CHHHHHHHHHHHHHHCCCEEEHHHCHHHHCCCCEEEECCCCHHHHCCCCCEEEEECCCCC
TDAQGNPLTPEEIELLHAGDEENDNTDTLMVIRVPNDGSSATAISIPRDTYVHDENVGNL
CCCCCCCCCHHHHHEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEECCCCCCCE
KINGVYRAYKNRKASELVNSGESDQKHIDELSKEAGRKALISSISDLTGVTVDHYAEVGL
EEEEEHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LGFVLLTNAVGGVDVCLNNDVYDEFSGADFKAGQQTLRDGQALAFVRQRHGLPRGDLDRI
HHHHHHHHCCCCEEEEECCCCHHHCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHH
VRQQAFMASLVAKVLSSGTLTNPSKLSDLGEAVSRSVVIDKNWDVMSFANQLQNLAGGNV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCE
KFNTIPVTSIDGVGDYGESVVTVDKNQVHQFFDRLLNGNNGEETPTSDSEAPAENPHTST
EEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
TIDVLNATSTTGLASQVAGHLSAKHYTIGNIGNALEGMYHESQIVAADPNNEAVKAIAAE
EEEEEECCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
LGGLPITQRNDLDADSVVVVIASDYSGPTGDGAESSDSSSSTTTVGKPGSDEGEAIVSPE
HCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCC
IDAGGQGPRCVN
CCCCCCCCCCCC
>Mature Secondary Structure
MLLSLLSALVLIVSAAGYFTVGRIGNTVASAGNLVLGGDKGMKEAADGATDILLVGSDSR
CHHHHHHHHHHHHHHCCCEEEHHHCHHHHCCCCEEEECCCCHHHHCCCCCEEEEECCCCC
TDAQGNPLTPEEIELLHAGDEENDNTDTLMVIRVPNDGSSATAISIPRDTYVHDENVGNL
CCCCCCCCCHHHHHEEECCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEECCCCCCCE
KINGVYRAYKNRKASELVNSGESDQKHIDELSKEAGRKALISSISDLTGVTVDHYAEVGL
EEEEEHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LGFVLLTNAVGGVDVCLNNDVYDEFSGADFKAGQQTLRDGQALAFVRQRHGLPRGDLDRI
HHHHHHHHCCCCEEEEECCCCHHHCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCHHHHH
VRQQAFMASLVAKVLSSGTLTNPSKLSDLGEAVSRSVVIDKNWDVMSFANQLQNLAGGNV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCE
KFNTIPVTSIDGVGDYGESVVTVDKNQVHQFFDRLLNGNNGEETPTSDSEAPAENPHTST
EEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
TIDVLNATSTTGLASQVAGHLSAKHYTIGNIGNALEGMYHESQIVAADPNNEAVKAIAAE
EEEEEECCCCHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
LGGLPITQRNDLDADSVVVVIASDYSGPTGDGAESSDSSSSTTTVGKPGSDEGEAIVSPE
HCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEECCC
IDAGGQGPRCVN
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA