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The map label for this gene is hypC [H]

Identifier: 38233274

GI number: 38233274

Start: 643324

End: 643581

Strand: Reverse

Name: hypC [H]

Synonym: DIP0667

Alternate gene names: 38233274

Gene position: 643581-643324 (Counterclockwise)

Preceding gene: 38233276

Following gene: 38233273

Centisome position: 25.86

GC content: 49.61

Gene sequence:

>258_bases
ATGTGCCTTGGGGTGCCCGCCCAAATTGCGGAAATTCATGACTCTACGAGAGCTACTGTAAGCATGAGTGGCGTCTCGCG
CATGGTTTCCACCGATCTTCTTGCCGAAACAATTGATGTAGGTGACTGGGTTTTGATCCATGTGGGTTTTGCGCTGAGCA
AGATTGATGAAGACGAGGCGGCAGTGACGCTTCAACAAATTAAGCAGCTGGGCGGCTTTGATGAGGAACTGCAATCTTTT
GAGTCATCGGAGATTTGA

Upstream 100 bases:

>100_bases
TTACCTTGTGTTCGTCGTCGTTTAGTCGATTCTTGGGTTCCATCGATTGTTTCCTTGGTAGTGTTTTCTAGCGGTATTGA
AGGATATGAGGAGTAAATCT

Downstream 100 bases:

>100_bases
TGAAGTACGTAGATGAGTTCCGCGATCCTGAAGCAGCCAAAGCACTTCTGAATCGTATCGAAAAAGACGCGGCCCAGCTT
GGCGAGATCTCGCTCATGGA

Product: hydrogenase expression/formation protein HypC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 85

Protein sequence:

>85_residues
MCLGVPAQIAEIHDSTRATVSMSGVSRMVSTDLLAETIDVGDWVLIHVGFALSKIDEDEAAVTLQQIKQLGGFDEELQSF
ESSEI

Sequences:

>Translated_85_residues
MCLGVPAQIAEIHDSTRATVSMSGVSRMVSTDLLAETIDVGDWVLIHVGFALSKIDEDEAAVTLQQIKQLGGFDEELQSF
ESSEI
>Mature_85_residues
MCLGVPAQIAEIHDSTRATVSMSGVSRMVSTDLLAETIDVGDWVLIHVGFALSKIDEDEAAVTLQQIKQLGGFDEELQSF
ESSEI

Specific function: Required for production of hydrogenase [H]

COG id: COG0298

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupF/hypC family [H]

Homologues:

Organism=Escherichia coli, GI1789364, Length=75, Percent_Identity=42.6666666666667, Blast_Score=61, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019812
- InterPro:   IPR001109 [H]

Pfam domain/function: PF01455 HupF_HypC [H]

EC number: NA

Molecular weight: Translated: 9181; Mature: 9181

Theoretical pI: Translated: 3.87; Mature: 3.87

Prosite motif: PS01097 HUPF_HYPC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLGVPAQIAEIHDSTRATVSMSGVSRMVSTDLLAETIDVGDWVLIHVGFALSKIDEDEA
CCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH
AVTLQQIKQLGGFDEELQSFESSEI
HHHHHHHHHHCCCHHHHHHHCCCCC
>Mature Secondary Structure
MCLGVPAQIAEIHDSTRATVSMSGVSRMVSTDLLAETIDVGDWVLIHVGFALSKIDEDEA
CCCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH
AVTLQQIKQLGGFDEELQSFESSEI
HHHHHHHHHHCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12810954 [H]