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The map label for this gene is ymdB [C]

Identifier: 38233254

GI number: 38233254

Start: 621208

End: 621972

Strand: Reverse

Name: ymdB [C]

Synonym: DIP0647

Alternate gene names: 38233254

Gene position: 621972-621208 (Counterclockwise)

Preceding gene: 38233255

Following gene: 38233248

Centisome position: 24.99

GC content: 52.68

Gene sequence:

>765_bases
ATGACCAATAGCCCCACCGACGCTCAACTAACAGCAGCACGGAATTTTCTCCACGCCCTAGAAGCTGACGATCCCCGAAA
TGCCGTTGTTGTATCGGAAGGAATCGACGATTCTTTCCAACACACACTTTCTAGTATCGCTGCGATGGTGAATATGCGTG
ATCCGCGCGCGGCTTCTCAAGAACTCCAAAAGGCCCAATCAGCTTTCCTCAAAGCCACCACGCCTGCGGCTACAGTCGTG
GTAGGAGACATCACAGAGTTACCATTTTCGGCAATGGTGGTGCCGGCTACTCAAACGTTGATTGGGCCGACGTCGCCGTC
GATAAGCGATCTCGCGGCCCGAATCCATCAACGCGCTGGTTTCGGTCTTCGCCTTGAATGCGCACGACTGCTCAAAGAAT
CCCACGAGCACATAGAGGTAGGATCTGCGTACGTTACAAGCGGTTTTTTACTTCCCACACCATGGATTATTCACATTGTG
ACCCCACAGCTTAATTTGGCAGCGCGAGGCGAAAGTATCGAATTATTACGTCAGTGTTTCCAAAATATTTTTGCCACCGC
TGCGGGAAGGGATTGGAAGGAATTGACGATTCCTTCCCAACTAACAGGACCGTTAGGGTTCCCCGCGGGAATGGAGGCCC
AAATCCTCAGCGAGGAGCTAGCAGCCGCCAGGAAAACAGGATTCTCGGCGCATGTGGTTATCGTATGTGACTCGGAAACC
GCAGCCGGAGCGTATCGACGCACCTTCGCACCAGTAACGGATTAA

Upstream 100 bases:

>100_bases
CCAAAACAGTCGGTGACGCAGTCACCGAAATCCGCGGCCCCATCACCCGCTGGTGCACCGCACACGGAATCAACATCAGT
AACTAATACAATAAGGCGCT

Downstream 100 bases:

>100_bases
ACACACGAAAATAACAGCAGCCGGTTCGAATCTCCGCGCGGGAGATAATCGAACCGGCTGCTGTGCGTCTAACTGTTAGA
CGGTGATGGCTACTTGATCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MTNSPTDAQLTAARNFLHALEADDPRNAVVVSEGIDDSFQHTLSSIAAMVNMRDPRAASQELQKAQSAFLKATTPAATVV
VGDITELPFSAMVVPATQTLIGPTSPSISDLAARIHQRAGFGLRLECARLLKESHEHIEVGSAYVTSGFLLPTPWIIHIV
TPQLNLAARGESIELLRQCFQNIFATAAGRDWKELTIPSQLTGPLGFPAGMEAQILSEELAAARKTGFSAHVVIVCDSET
AAGAYRRTFAPVTD

Sequences:

>Translated_254_residues
MTNSPTDAQLTAARNFLHALEADDPRNAVVVSEGIDDSFQHTLSSIAAMVNMRDPRAASQELQKAQSAFLKATTPAATVV
VGDITELPFSAMVVPATQTLIGPTSPSISDLAARIHQRAGFGLRLECARLLKESHEHIEVGSAYVTSGFLLPTPWIIHIV
TPQLNLAARGESIELLRQCFQNIFATAAGRDWKELTIPSQLTGPLGFPAGMEAQILSEELAAARKTGFSAHVVIVCDSET
AAGAYRRTFAPVTD
>Mature_253_residues
TNSPTDAQLTAARNFLHALEADDPRNAVVVSEGIDDSFQHTLSSIAAMVNMRDPRAASQELQKAQSAFLKATTPAATVVV
GDITELPFSAMVVPATQTLIGPTSPSISDLAARIHQRAGFGLRLECARLLKESHEHIEVGSAYVTSGFLLPTPWIIHIVT
PQLNLAARGESIELLRQCFQNIFATAAGRDWKELTIPSQLTGPLGFPAGMEAQILSEELAAARKTGFSAHVVIVCDSETA
AGAYRRTFAPVTD

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 27176; Mature: 27045

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNSPTDAQLTAARNFLHALEADDPRNAVVVSEGIDDSFQHTLSSIAAMVNMRDPRAASQ
CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHH
ELQKAQSAFLKATTPAATVVVGDITELPFSAMVVPATQTLIGPTSPSISDLAARIHQRAG
HHHHHHHHHHHCCCCCEEEEECCHHHCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHHCC
FGLRLECARLLKESHEHIEVGSAYVTSGFLLPTPWIIHIVTPQLNLAARGESIELLRQCF
CCCHHHHHHHHHHCHHHEECCCHHHHCCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHH
QNIFATAAGRDWKELTIPSQLTGPLGFPAGMEAQILSEELAAARKTGFSAHVVIVCDSET
HHHHHHHCCCCHHHEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
AAGAYRRTFAPVTD
CCCHHHHCCCCCCC
>Mature Secondary Structure 
TNSPTDAQLTAARNFLHALEADDPRNAVVVSEGIDDSFQHTLSSIAAMVNMRDPRAASQ
CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHH
ELQKAQSAFLKATTPAATVVVGDITELPFSAMVVPATQTLIGPTSPSISDLAARIHQRAG
HHHHHHHHHHHCCCCCEEEEECCHHHCCCCEEEECCHHHHCCCCCCCHHHHHHHHHHHCC
FGLRLECARLLKESHEHIEVGSAYVTSGFLLPTPWIIHIVTPQLNLAARGESIELLRQCF
CCCHHHHHHHHHHCHHHEECCCHHHHCCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHH
QNIFATAAGRDWKELTIPSQLTGPLGFPAGMEAQILSEELAAARKTGFSAHVVIVCDSET
HHHHHHHCCCCHHHEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC
AAGAYRRTFAPVTD
CCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]