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The map label for this gene is sigD [H]

Identifier: 38233186

GI number: 38233186

Start: 545504

End: 546070

Strand: Direct

Name: sigD [H]

Synonym: DIP0577

Alternate gene names: 38233186

Gene position: 545504-546070 (Clockwise)

Preceding gene: 38233185

Following gene: 38233187

Centisome position: 21.92

GC content: 54.5

Gene sequence:

>567_bases
GTGAACGAAGAGGTGAGGGAGCTAGAACGACTAGTTCCTGCTGCTGCAACGGGCGATAAAACCGCCCTTCAGCGCATCAT
CTCTATCGTGTATCCGCAGGTGCTTCGCTATGCACGCACTCGCCTGAGTGGCGGACGGCATCCCACCCCAGAAGATGTAG
CTCAAGAAATTTGTCTTGCCGTAGCTACTTCTATTGCCAAATTTGTGGATCAGGGAAAGCCCTTCATGGCGTTCGTGTAT
GGCATTGCCTCCAACAAAGTGGCTGATGCACACCGCCTGTATTCTCGCGATCTTTCTAACCCCACAGACGAGGTGCCAGA
AACAGAGATCGATAACGACACTCCGGAGTCATTTGCCCTGCTAGCGGCGGGAAGTAACAGAGTGCAGCAACTTCTCGATC
TACTAGGTGACAAGCCACGCGAAATCCTCACCCTGAGGGTCTTTGTTGGGTTATCGGCTGAGGAAACAGCCGAGATTGTA
GGAAGTACGCCGGGCGCGGTGCGTGTCGCGCAACACCGTGCGCTGGCAACGTTGCGTAAGGCAATAGAGCAGGAGACTGG
GGAATGA

Upstream 100 bases:

>100_bases
CAACACTTATCCAGTAGATTTTTAAAATAGTTATGTGCTCGATAGGCTTCGACCAAGAGTGCACATAAGTTTCTCCAAAA
AATGAAAGGCGCGAAGACCA

Downstream 100 bases:

>100_bases
CCAAACACCGTTGGGATGGCGCCGATGGGCGCGCCTCTCAGCCGATTGATGAGCTGTGGAACGATGACGCGTTTCTTACT
CAGCTTTCTCGGGGGATCGA

Product: RNA polymerase sigma factor SigD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MNEEVRELERLVPAAATGDKTALQRIISIVYPQVLRYARTRLSGGRHPTPEDVAQEICLAVATSIAKFVDQGKPFMAFVY
GIASNKVADAHRLYSRDLSNPTDEVPETEIDNDTPESFALLAAGSNRVQQLLDLLGDKPREILTLRVFVGLSAEETAEIV
GSTPGAVRVAQHRALATLRKAIEQETGE

Sequences:

>Translated_188_residues
MNEEVRELERLVPAAATGDKTALQRIISIVYPQVLRYARTRLSGGRHPTPEDVAQEICLAVATSIAKFVDQGKPFMAFVY
GIASNKVADAHRLYSRDLSNPTDEVPETEIDNDTPESFALLAAGSNRVQQLLDLLGDKPREILTLRVFVGLSAEETAEIV
GSTPGAVRVAQHRALATLRKAIEQETGE
>Mature_188_residues
MNEEVRELERLVPAAATGDKTALQRIISIVYPQVLRYARTRLSGGRHPTPEDVAQEICLAVATSIAKFVDQGKPFMAFVY
GIASNKVADAHRLYSRDLSNPTDEVPETEIDNDTPESFALLAAGSNRVQQLLDLLGDKPREILTLRVFVGLSAEETAEIV
GSTPGAVRVAQHRALATLRKAIEQETGE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20523; Mature: 20523

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEEVRELERLVPAAATGDKTALQRIISIVYPQVLRYARTRLSGGRHPTPEDVAQEICLA
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
VATSIAKFVDQGKPFMAFVYGIASNKVADAHRLYSRDLSNPTDEVPETEIDNDTPESFAL
HHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEE
LAAGSNRVQQLLDLLGDKPREILTLRVFVGLSAEETAEIVGSTPGAVRVAQHRALATLRK
HHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AIEQETGE
HHHHHCCC
>Mature Secondary Structure
MNEEVRELERLVPAAATGDKTALQRIISIVYPQVLRYARTRLSGGRHPTPEDVAQEICLA
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
VATSIAKFVDQGKPFMAFVYGIASNKVADAHRLYSRDLSNPTDEVPETEIDNDTPESFAL
HHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEE
LAAGSNRVQQLLDLLGDKPREILTLRVFVGLSAEETAEIVGSTPGAVRVAQHRALATLRK
HHCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
AIEQETGE
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]