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The map label for this gene is ccsA [H]

Identifier: 38233028

GI number: 38233028

Start: 381198

End: 382097

Strand: Direct

Name: ccsA [H]

Synonym: DIP0414

Alternate gene names: 38233028

Gene position: 381198-382097 (Clockwise)

Preceding gene: 38233027

Following gene: 38233031

Centisome position: 15.32

GC content: 51.33

Gene sequence:

>900_bases
ATGAACGTCAACTCGAACCTTGCGCAGCTATCAGATATGGCTTTCGCATCGAGCTTCGTTATTTACTTCATCGCGTTGGT
GTTATCCATCGTGTACTACATGAAGGTTAAGGGAATCGTTGATCAGCAGCGTGAAGGCCTAGAGCCCTCCACGGCATCGG
CGGATAAGTTCGCTGGTATGACGCAGATGATTGTGTGGCTTGGTGTTTTCGTCCACATTGCTTCCGTGGTGTTGCGTGGT
TTGTCGGCGAGCCGATTCCCTTTCGGAAACCTCTATGAGTACATCTTGGTGATCAGCGCTTTTGCCGTTGCTGTGGCTGC
TGGTTTCTTGCAGCGCCATGAGCTTCGGGCTATGTGGCCATGGGTGCTTACCCCAGTGCTGGCCTTGCTGTTTTATGGTG
GCACCAAGCTGTATGCGGATTCCGCTCCGGTGGTTCCTGCTTTGCAGTCCTTCTGGTTCCCGATTCACGTATCGACGGTT
TCCATTGGCGCGTCGATTGGTTTGATTTCTGGGGTGGCGTCCTTGTTGTATCTGCTGCGTATGAGCAAGAACAAGCGTCT
TGCGGCTTTAACGTCGCCGTTGCCTTCTGCTAAGACGTTGGATGCGATTGCTTACCGTACGGCTATTGTGACTGTGCCAG
TTTTTGGTTTGGGTATTGTTCTTGGTGCTATTTGGGCGGAGAGCGCGTGGGGTCGTTTCTGGGGTTGGGACCCTAAGGAG
ACTGTCGCGTTTATTACTTGGATTTTGTATGCGGCTTATCTGCATGCTCGTGCTACCGCCGGGTGGCGTGACACCAAGGC
TGCATGGATCAATATCGTGGCATTGATAACCATGGTGTTTAACTTGTTCTTTATTAATATTGTGGTGTCAGGCCTGCACT
CTTATGCTGGCTTGAATTAG

Upstream 100 bases:

>100_bases
GTGCAGGTTGGGGCGAGGAATATGACAGAATTCACCGTGAAATTCTCGGATTGCCGGATCCAGAGTATTCTGATCCGGAG
CTAGGGAGATAAGAGGTGCT

Downstream 100 bases:

>100_bases
AGCGTCCGGATGAGCTCGTGTACGCGGGCGAACTCGTCGTTGACTATCTCGTAATATGCCCATTTGCCACGTTTGTGGCG
GGTGACGAGGTTGGCATCGG

Product: putative cytochrome C-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MNVNSNLAQLSDMAFASSFVIYFIALVLSIVYYMKVKGIVDQQREGLEPSTASADKFAGMTQMIVWLGVFVHIASVVLRG
LSASRFPFGNLYEYILVISAFAVAVAAGFLQRHELRAMWPWVLTPVLALLFYGGTKLYADSAPVVPALQSFWFPIHVSTV
SIGASIGLISGVASLLYLLRMSKNKRLAALTSPLPSAKTLDAIAYRTAIVTVPVFGLGIVLGAIWAESAWGRFWGWDPKE
TVAFITWILYAAYLHARATAGWRDTKAAWINIVALITMVFNLFFINIVVSGLHSYAGLN

Sequences:

>Translated_299_residues
MNVNSNLAQLSDMAFASSFVIYFIALVLSIVYYMKVKGIVDQQREGLEPSTASADKFAGMTQMIVWLGVFVHIASVVLRG
LSASRFPFGNLYEYILVISAFAVAVAAGFLQRHELRAMWPWVLTPVLALLFYGGTKLYADSAPVVPALQSFWFPIHVSTV
SIGASIGLISGVASLLYLLRMSKNKRLAALTSPLPSAKTLDAIAYRTAIVTVPVFGLGIVLGAIWAESAWGRFWGWDPKE
TVAFITWILYAAYLHARATAGWRDTKAAWINIVALITMVFNLFFINIVVSGLHSYAGLN
>Mature_299_residues
MNVNSNLAQLSDMAFASSFVIYFIALVLSIVYYMKVKGIVDQQREGLEPSTASADKFAGMTQMIVWLGVFVHIASVVLRG
LSASRFPFGNLYEYILVISAFAVAVAAGFLQRHELRAMWPWVLTPVLALLFYGGTKLYADSAPVVPALQSFWFPIHVSTV
SIGASIGLISGVASLLYLLRMSKNKRLAALTSPLPSAKTLDAIAYRTAIVTVPVFGLGIVLGAIWAESAWGRFWGWDPKE
TVAFITWILYAAYLHARATAGWRDTKAAWINIVALITMVFNLFFINIVVSGLHSYAGLN

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 32752; Mature: 32752

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNSNLAQLSDMAFASSFVIYFIALVLSIVYYMKVKGIVDQQREGLEPSTASADKFAGM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
TQMIVWLGVFVHIASVVLRGLSASRFPFGNLYEYILVISAFAVAVAAGFLQRHELRAMWP
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVLTPVLALLFYGGTKLYADSAPVVPALQSFWFPIHVSTVSIGASIGLISGVASLLYLLR
HHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHHHHH
MSKNKRLAALTSPLPSAKTLDAIAYRTAIVTVPVFGLGIVLGAIWAESAWGRFWGWDPKE
HCCCCCEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
TVAFITWILYAAYLHARATAGWRDTKAAWINIVALITMVFNLFFINIVVSGLHSYAGLN
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNVNSNLAQLSDMAFASSFVIYFIALVLSIVYYMKVKGIVDQQREGLEPSTASADKFAGM
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
TQMIVWLGVFVHIASVVLRGLSASRFPFGNLYEYILVISAFAVAVAAGFLQRHELRAMWP
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVLTPVLALLFYGGTKLYADSAPVVPALQSFWFPIHVSTVSIGASIGLISGVASLLYLLR
HHHHHHHHHHHHCCCEEECCCCCHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHHHHH
MSKNKRLAALTSPLPSAKTLDAIAYRTAIVTVPVFGLGIVLGAIWAESAWGRFWGWDPKE
HCCCCCEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
TVAFITWILYAAYLHARATAGWRDTKAAWINIVALITMVFNLFFINIVVSGLHSYAGLN
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA