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The map label for this gene is xerC [H]

Identifier: 38232807

GI number: 38232807

Start: 155600

End: 156826

Strand: Reverse

Name: xerC [H]

Synonym: DIP0182

Alternate gene names: 38232807

Gene position: 156826-155600 (Counterclockwise)

Preceding gene: 38232808

Following gene: 38232803

Centisome position: 6.3

GC content: 54.6

Gene sequence:

>1227_bases
ATGGCTACCGTCCGTGACCTCTGGACAAAAAGAAACCCCAACACCACATCCAAAACGAAACGTATCCGATCAGCGCGATG
GGGCGTCGGCAAGCGCTGGCAAGCCGTCTGGATTGAGAACGGGCGCGAAGCAACAAAAACATTCGAGACCCGCGACGAGG
CAGAACTCTGGGCAGCCCGCGCAGAAGTCGGAAAAGCAGACGGCACCTGGATCACCAAAGACAAAGTCGACATCACACTC
TCCGACCTATGGGAACCCTGGATCGCATCAAAAGGAAACATCTCAGACAAAACCAAACGCGACTACCTCAGCTACTGGAA
CGTCCACATCCGACCACAATGGGGCCAAACCCCTTGCGCACACATCCAACGCTCAGTCATCAACGCATGGATCCCCACAC
TCTCCACAATGAAAGGCGTGCCAGCCAGCCAACCACCGCGACCACTCAGCGAATCAGCCATGCGCAAAGTCGGCCTCATC
ATCCACGGAATCCTCGACCTCGCAGTGGAGCTAGGCGTCATCCACCAAAACCCCATCAGAACTGGCGACCTACCAAAACA
AAAGAAATCAGAACGCCGCTACCTCAAAATCACAGAAGTCGACGAACTCATCAGACAAGCACCCACCGAACAAGCAAAAC
TCCTCCTACGCGTCCTCATCATGACCGGTCTAAGACCAGGAGAAGCAAAAGGACTCAAAGTCAAAGACCTAGACCCAGTA
CGCGGACGTCTCATGATCCGCCGCGACGTCGACGACTTAGGACACGAAGACTCGACAAAAACACGAAACCACCGCGACGT
ACCCATCGGCGGCGAAATTCTGTTACTCCTCGATCGCTACGCTCAAGGAAAAGATCCTGATTCCTGGCTTATCCCAGATG
AACGAGGCAAAGTATGGACCACCTCACGCTGGCGTGTTGTATGGAAAAACCTGTGCATCTGGACTGGGATTGGCGACCTC
GACACCTACGAGCTGCGCCACACTGCCGCATCCATCGCCATTGCAGCAGGAGCTGACGTTAAAACAGTACAACTCATGCT
CGGCCACTCCAGTGCTGCGATGACCCTGGATATCTATGCACATCTTTGGGAAGAAGGCCTTGATGCCATTCCCGGCGCGA
TGGAAGCACATATGGAAAGTGAGAGGAAACGTGCCGAGGAAGCGTCTACAGTTCATGAGGCGTCAGAGGCGGAGCGCAGG
CGGGCTCAGTTTAAGGTGATTGGTTAG

Upstream 100 bases:

>100_bases
GACAGCCAAGTGCCCTTCACCTGTCCGCCGGCAAGCAAGACCCGGTGAAGGGCAATGCCCAGCCCCTTCTAAAGAACTAA
GCAAGAAAGAAGTCTACCCC

Downstream 100 bases:

>100_bases
CTGGCGCCCACTTTACACCGCATTAGGACAATAATTGCAAGGTTTTTCATGGATAAATTTCTTTAGCTTGAGCATTAAAA
ACACACTTTCGGAACACTTA

Product: putative phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MATVRDLWTKRNPNTTSKTKRIRSARWGVGKRWQAVWIENGREATKTFETRDEAELWAARAEVGKADGTWITKDKVDITL
SDLWEPWIASKGNISDKTKRDYLSYWNVHIRPQWGQTPCAHIQRSVINAWIPTLSTMKGVPASQPPRPLSESAMRKVGLI
IHGILDLAVELGVIHQNPIRTGDLPKQKKSERRYLKITEVDELIRQAPTEQAKLLLRVLIMTGLRPGEAKGLKVKDLDPV
RGRLMIRRDVDDLGHEDSTKTRNHRDVPIGGEILLLLDRYAQGKDPDSWLIPDERGKVWTTSRWRVVWKNLCIWTGIGDL
DTYELRHTAASIAIAAGADVKTVQLMLGHSSAAMTLDIYAHLWEEGLDAIPGAMEAHMESERKRAEEASTVHEASEAERR
RAQFKVIG

Sequences:

>Translated_408_residues
MATVRDLWTKRNPNTTSKTKRIRSARWGVGKRWQAVWIENGREATKTFETRDEAELWAARAEVGKADGTWITKDKVDITL
SDLWEPWIASKGNISDKTKRDYLSYWNVHIRPQWGQTPCAHIQRSVINAWIPTLSTMKGVPASQPPRPLSESAMRKVGLI
IHGILDLAVELGVIHQNPIRTGDLPKQKKSERRYLKITEVDELIRQAPTEQAKLLLRVLIMTGLRPGEAKGLKVKDLDPV
RGRLMIRRDVDDLGHEDSTKTRNHRDVPIGGEILLLLDRYAQGKDPDSWLIPDERGKVWTTSRWRVVWKNLCIWTGIGDL
DTYELRHTAASIAIAAGADVKTVQLMLGHSSAAMTLDIYAHLWEEGLDAIPGAMEAHMESERKRAEEASTVHEASEAERR
RAQFKVIG
>Mature_407_residues
ATVRDLWTKRNPNTTSKTKRIRSARWGVGKRWQAVWIENGREATKTFETRDEAELWAARAEVGKADGTWITKDKVDITLS
DLWEPWIASKGNISDKTKRDYLSYWNVHIRPQWGQTPCAHIQRSVINAWIPTLSTMKGVPASQPPRPLSESAMRKVGLII
HGILDLAVELGVIHQNPIRTGDLPKQKKSERRYLKITEVDELIRQAPTEQAKLLLRVLIMTGLRPGEAKGLKVKDLDPVR
GRLMIRRDVDDLGHEDSTKTRNHRDVPIGGEILLLLDRYAQGKDPDSWLIPDERGKVWTTSRWRVVWKNLCIWTGIGDLD
TYELRHTAASIAIAAGADVKTVQLMLGHSSAAMTLDIYAHLWEEGLDAIPGAMEAHMESERKRAEEASTVHEASEAERRR
AQFKVIG

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46252; Mature: 46120

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVRDLWTKRNPNTTSKTKRIRSARWGVGKRWQAVWIENGREATKTFETRDEAELWAAR
CCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCHHHHHHHHH
AEVGKADGTWITKDKVDITLSDLWEPWIASKGNISDKTKRDYLSYWNVHIRPQWGQTPCA
HHCCCCCCCEEECCCCEEEHHHHCCHHHCCCCCCCCHHHHHHHHHCEEEEECCCCCCHHH
HIQRSVINAWIPTLSTMKGVPASQPPRPLSESAMRKVGLIIHGILDLAVELGVIHQNPIR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TGDLPKQKKSERRYLKITEVDELIRQAPTEQAKLLLRVLIMTGLRPGEAKGLKVKDLDPV
CCCCCCHHHCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCC
RGRLMIRRDVDDLGHEDSTKTRNHRDVPIGGEILLLLDRYAQGKDPDSWLIPDERGKVWT
CCEEEEEECHHHCCCCCCCCCCCCCCCCCCCHHEEEEEHHHCCCCCCCCCCCCCCCCEEE
TSRWRVVWKNLCIWTGIGDLDTYELRHTAASIAIAAGADVKTVQLMLGHSSAAMTLDIYA
CCHHHHHHHHHHEEECCCCCCHHHHHHHHHHEEEECCCCCEEEEEEECCCCCHHHHHHHH
HLWEEGLDAIPGAMEAHMESERKRAEEASTVHEASEAERRRAQFKVIG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC
>Mature Secondary Structure 
ATVRDLWTKRNPNTTSKTKRIRSARWGVGKRWQAVWIENGREATKTFETRDEAELWAAR
CCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCHHHHHHHHH
AEVGKADGTWITKDKVDITLSDLWEPWIASKGNISDKTKRDYLSYWNVHIRPQWGQTPCA
HHCCCCCCCEEECCCCEEEHHHHCCHHHCCCCCCCCHHHHHHHHHCEEEEECCCCCCHHH
HIQRSVINAWIPTLSTMKGVPASQPPRPLSESAMRKVGLIIHGILDLAVELGVIHQNPIR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TGDLPKQKKSERRYLKITEVDELIRQAPTEQAKLLLRVLIMTGLRPGEAKGLKVKDLDPV
CCCCCCHHHCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCC
RGRLMIRRDVDDLGHEDSTKTRNHRDVPIGGEILLLLDRYAQGKDPDSWLIPDERGKVWT
CCEEEEEECHHHCCCCCCCCCCCCCCCCCCCHHEEEEEHHHCCCCCCCCCCCCCCCCEEE
TSRWRVVWKNLCIWTGIGDLDTYELRHTAASIAIAAGADVKTVQLMLGHSSAAMTLDIYA
CCHHHHHHHHHHEEECCCCCCHHHHHHHHHHEEEECCCCCEEEEEEECCCCCHHHHHHHH
HLWEEGLDAIPGAMEAHMESERKRAEEASTVHEASEAERRRAQFKVIG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA