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The map label for this gene is abrB [H]

Identifier: 38232756

GI number: 38232756

Start: 107838

End: 108890

Strand: Reverse

Name: abrB [H]

Synonym: DIP0128

Alternate gene names: 38232756

Gene position: 108890-107838 (Counterclockwise)

Preceding gene: 38232757

Following gene: 38232751

Centisome position: 4.38

GC content: 58.59

Gene sequence:

>1053_bases
GTGGCATGGAATAGCAGTGTTGCCGCCAAATGGCTGCTGGTGGTTCCAGCCTCGGCTGCAACCGGATATGTGTTCAGCAT
GTTGCATGTTCCTGCGGCATGGATTCTCGGCGCGATTTTTGTATCGGCCACGATGGCGATTGTGAGCGGCACGGAGCTAC
CGATCCACAAGGAGGTGTTTAACCTCGGCCGCGGCTTCATTGGAATTCTCGCGGGTTTGCCGTTAGCTACTGCGAACCCG
GCGCTGCTGGCACGCTACGTGCTGCCTGGCCTCATGGTCACGTTTGTCACGTTAGCGATTGGCATTGTGGGTGGCATGGT
GTTGGCGCGGGCGCAGCCGTTGCTTTCTCAAGAGACGGGCATTTTGTCGATGTTGGCTGGTGGGGCGTCGGTCATGCCGG
TGTTGGCGCAGGATCTGGGCGCGGATTTTCGCTATGTGGCATTGTCGCAGTATTTGCGCCTGGTGGCGGTGTCGATGTCG
TTGCCGCTCGTGGCTCATATGATTGCGCCGACGGGTTTGGACCATGTGGTTACCCCGCGTGACGACCAGCCATGGTGGGC
GCTTGCGCTTGTGTGTGTGATTGCGGTGGTGGGCCATCGTCTTGCGGCGGTGTTGCGGATTCCGGTGCCGTCGATTCTGG
GGCCGTTGCTTCTTATTGTTGCTGCTAGTGCGGTGTTGCCGCATGTGGATTTCACTCCGCCAATGGTGGTGCGCATTTTT
GCGTTTTTGTGCATCGGTTGGATGTGCGGCGGTGGGTTATCGGTGGCTGCGTTGAAGTTTTTTGCACGCCAAGTACCTGC
CACGATGATTTTTATCGTGGTGTTGTTGGGTGGTTGTGCGCTTACGGCGTGGCCGTTGGCTGCGACCATGGGCGTGGATT
ATTTTGACGCGTATTTGGCTACCAGCCCTGGTGGCTTGGAGACGGTCCTAGCCCTTGCCAGCGAGGGCGGTGCTGGCCCG
ATTGTGGTGGCCGTGCAGATTATCCGCCTGTTGTGTGTGTTGTTGCTGGCAGGGTGGCTGCCGCAGCTTATTAGATTGCT
GCGGAGGGGTTGA

Upstream 100 bases:

>100_bases
ACGATCGATGCCTCGGCACCGGATTCGATAAAAATCAGCAGGCCTGATGGCAAGGGCGTGGTGATTACCCAGGATTCCTA
TGAGGCTGTGAACTAACAAA

Downstream 100 bases:

>100_bases
TCTTTTCTAGGACGCGGGTGACGGCGGCGAGGTCGGCGTCGTCAAAGCCCAGCATGTCGTTGAGCTCGTCGTTCATTTTT
TTGGCTTTGGTTTTCAGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: AidB regulator [H]

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MAWNSSVAAKWLLVVPASAATGYVFSMLHVPAAWILGAIFVSATMAIVSGTELPIHKEVFNLGRGFIGILAGLPLATANP
ALLARYVLPGLMVTFVTLAIGIVGGMVLARAQPLLSQETGILSMLAGGASVMPVLAQDLGADFRYVALSQYLRLVAVSMS
LPLVAHMIAPTGLDHVVTPRDDQPWWALALVCVIAVVGHRLAAVLRIPVPSILGPLLLIVAASAVLPHVDFTPPMVVRIF
AFLCIGWMCGGGLSVAALKFFARQVPATMIFIVVLLGGCALTAWPLAATMGVDYFDAYLATSPGGLETVLALASEGGAGP
IVVAVQIIRLLCVLLLAGWLPQLIRLLRRG

Sequences:

>Translated_350_residues
MAWNSSVAAKWLLVVPASAATGYVFSMLHVPAAWILGAIFVSATMAIVSGTELPIHKEVFNLGRGFIGILAGLPLATANP
ALLARYVLPGLMVTFVTLAIGIVGGMVLARAQPLLSQETGILSMLAGGASVMPVLAQDLGADFRYVALSQYLRLVAVSMS
LPLVAHMIAPTGLDHVVTPRDDQPWWALALVCVIAVVGHRLAAVLRIPVPSILGPLLLIVAASAVLPHVDFTPPMVVRIF
AFLCIGWMCGGGLSVAALKFFARQVPATMIFIVVLLGGCALTAWPLAATMGVDYFDAYLATSPGGLETVLALASEGGAGP
IVVAVQIIRLLCVLLLAGWLPQLIRLLRRG
>Mature_349_residues
AWNSSVAAKWLLVVPASAATGYVFSMLHVPAAWILGAIFVSATMAIVSGTELPIHKEVFNLGRGFIGILAGLPLATANPA
LLARYVLPGLMVTFVTLAIGIVGGMVLARAQPLLSQETGILSMLAGGASVMPVLAQDLGADFRYVALSQYLRLVAVSMSL
PLVAHMIAPTGLDHVVTPRDDQPWWALALVCVIAVVGHRLAAVLRIPVPSILGPLLLIVAASAVLPHVDFTPPMVVRIFA
FLCIGWMCGGGLSVAALKFFARQVPATMIFIVVLLGGCALTAWPLAATMGVDYFDAYLATSPGGLETVLALASEGGAGPI
VVAVQIIRLLCVLLLAGWLPQLIRLLRRG

Specific function: Seems to be involved in the regulation of AidB [H]

COG id: COG3180

COG function: function code R; Putative ammonia monooxygenase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AbrB family [H]

Homologues:

Organism=Escherichia coli, GI87081776, Length=320, Percent_Identity=31.875, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017516
- InterPro:   IPR007820 [H]

Pfam domain/function: PF05145 AmoA [H]

EC number: NA

Molecular weight: Translated: 36621; Mature: 36490

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWNSSVAAKWLLVVPASAATGYVFSMLHVPAAWILGAIFVSATMAIVSGTELPIHKEVF
CCCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
NLGRGFIGILAGLPLATANPALLARYVLPGLMVTFVTLAIGIVGGMVLARAQPLLSQETG
HHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ILSMLAGGASVMPVLAQDLGADFRYVALSQYLRLVAVSMSLPLVAHMIAPTGLDHVVTPR
HHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DDQPWWALALVCVIAVVGHRLAAVLRIPVPSILGPLLLIVAASAVLPHVDFTPPMVVRIF
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
AFLCIGWMCGGGLSVAALKFFARQVPATMIFIVVLLGGCALTAWPLAATMGVDYFDAYLA
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
TSPGGLETVLALASEGGAGPIVVAVQIIRLLCVLLLAGWLPQLIRLLRRG
CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AWNSSVAAKWLLVVPASAATGYVFSMLHVPAAWILGAIFVSATMAIVSGTELPIHKEVF
CCCCHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH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CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 8002588 [H]