| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is 38232740
Identifier: 38232740
GI number: 38232740
Start: 91122
End: 92600
Strand: Direct
Name: 38232740
Synonym: DIP0111
Alternate gene names: NA
Gene position: 91122-92600 (Clockwise)
Preceding gene: 38232739
Following gene: 38232741
Centisome position: 3.66
GC content: 57.0
Gene sequence:
>1479_bases GTGCGACTTCTTAAGCCGGCCCTTGTTCTCGCCATTGTGGCGGGTATGACGCTTTCTGCCTGCGGTTCTGATTCTGCGAC AAAAGACATCAGCGTTGCAGGCAGTGAACTGTCCTTAGATAAAACAGCGCTGGTTGCGGATTCTTCTGGGGTGGAGGTTT CGCAAGCGTTTTTCCCTGATGCCGACAAAGTAGATTCGGTTGTGGTGGCAGGTAGCACCGCGCAGCACCGCTGGGAGGGA GCACAAGAGGCCATTAAGCGCGGGGTCCCGTTGCTTGTCGACGACTCCTCCAACACCGAGGCCATCAATGCCGAGATCGA ACGGCTTGGGGTAAAAGATGTGGTTCGCATTGGTGATCCAGCAGCCGACGCCCAGCAAGTGGCGGCCAACGCAGCTGCTA AGAAACAACACACCGAGGACGTGATGGCACGCCAGATCACTGAGCTTTCTGCAGAACACGGTCACCTTGATGGCGGGGCA GCGGTGTTGGTATCGAAGGCGACGTCGGCAGCTAGTGTTGCTACTGCCAAAGCCTCCGGCGCCACCGTGGAATACCTCTC TTCAGGTGACCCACGTGAATCCGCTACTTTGCAAAAAGATGCCCACGCCAAAGTGGTGGGCTTAGGGCCGAGCTTTAGCA ACCAAGAGCGCTTCCACCGCGCGGTAGATATGCTGCAGGGCCCAGAAGTCCCAGGTGGCGGGCACTTGATTTTCCCTGAA CATCGCCTCGTCGCTTTGTATGGTCACCCCTCTGGCGGTGCACTCGGTGTGATGGGCGAACAACCTGCTCCGGAGGCAGT GGCCAAGGTAAAAGAGCTTACTGAGCACTATGCCGCCATCGATCCGCAGACCACCACCGTGCCTGCTTTTGAAATTATTG CCACCGTAGCCAGCGCGGATCCCGGCCCAGACGGCAACTACTCCAACGAAGTCACCATTGATGAGCTGCGTCCGTGGGTA GACGAGATCGGTAAAGCGGGCGGATATGCGGTCCTTGATCTGCAACCAGGCAGCGCGAACTTCCTCGACCAAGCCAAGCA GTTCGAGGAGCTGCTCAAACTTCCGCACGTGGGGCTTGCTCTTGACCCCGAGTGGCGCATCAACCCAGGTGAAAAGCCCA TGGAGCGGGTGGGAAGTGTTGAGGCCGCTGAGATTAATAGCACGGCTGAGTGGCTTGCTGGCCTTGTTCGCGATAATAAC CTGCCGCAAAAGCCCTTTGTGGTGCACCAGTTCCAGTGGCAGATGATCCGTGATCGGGAGCAGCTTAATACCACCGCCCC TGAGTTGGCGTGGATTCTGCACGCTGACGGTCATGGTCCGGCGCGCGATAAGTTTGCCACTTGGGAGATGGTGCAGCAGG ATCTGCAGCCGGAGTTCACTATGGCGTGGAAGAACTTTATTGATGAGGACACCCCGATGTTTACCCCAGAGCAAACTATG GATATTTATCCTCGCCCAGGGTTTGTTTCTTACCAATAA
Upstream 100 bases:
>100_bases TGGAGGATTAGGTCTTTCACTTCTTAGGCCGGCGGGAGTTGCTAGGCTGGGGTGCCTGAACCCCAGCTGTAACCACCACA TCCCTAGGAGGGATTTGATT
Downstream 100 bases:
>100_bases CTGTATTGTGGTGGGCTATGGCTACTCGTATTGCTGAACCAGGCGAGCCGATCATCGAGTTCTTCGCTGATTGGCTCGAC GGGATTTCTAATCCCACCAA
Product: putative lipoprotein
Products: NA
Alternate protein names: SH3 Type 3 Domain Protein; LigA Protein
Number of amino acids: Translated: 492; Mature: 492
Protein sequence:
>492_residues MRLLKPALVLAIVAGMTLSACGSDSATKDISVAGSELSLDKTALVADSSGVEVSQAFFPDADKVDSVVVAGSTAQHRWEG AQEAIKRGVPLLVDDSSNTEAINAEIERLGVKDVVRIGDPAADAQQVAANAAAKKQHTEDVMARQITELSAEHGHLDGGA AVLVSKATSAASVATAKASGATVEYLSSGDPRESATLQKDAHAKVVGLGPSFSNQERFHRAVDMLQGPEVPGGGHLIFPE HRLVALYGHPSGGALGVMGEQPAPEAVAKVKELTEHYAAIDPQTTTVPAFEIIATVASADPGPDGNYSNEVTIDELRPWV DEIGKAGGYAVLDLQPGSANFLDQAKQFEELLKLPHVGLALDPEWRINPGEKPMERVGSVEAAEINSTAEWLAGLVRDNN LPQKPFVVHQFQWQMIRDREQLNTTAPELAWILHADGHGPARDKFATWEMVQQDLQPEFTMAWKNFIDEDTPMFTPEQTM DIYPRPGFVSYQ
Sequences:
>Translated_492_residues MRLLKPALVLAIVAGMTLSACGSDSATKDISVAGSELSLDKTALVADSSGVEVSQAFFPDADKVDSVVVAGSTAQHRWEG AQEAIKRGVPLLVDDSSNTEAINAEIERLGVKDVVRIGDPAADAQQVAANAAAKKQHTEDVMARQITELSAEHGHLDGGA AVLVSKATSAASVATAKASGATVEYLSSGDPRESATLQKDAHAKVVGLGPSFSNQERFHRAVDMLQGPEVPGGGHLIFPE HRLVALYGHPSGGALGVMGEQPAPEAVAKVKELTEHYAAIDPQTTTVPAFEIIATVASADPGPDGNYSNEVTIDELRPWV DEIGKAGGYAVLDLQPGSANFLDQAKQFEELLKLPHVGLALDPEWRINPGEKPMERVGSVEAAEINSTAEWLAGLVRDNN LPQKPFVVHQFQWQMIRDREQLNTTAPELAWILHADGHGPARDKFATWEMVQQDLQPEFTMAWKNFIDEDTPMFTPEQTM DIYPRPGFVSYQ >Mature_492_residues MRLLKPALVLAIVAGMTLSACGSDSATKDISVAGSELSLDKTALVADSSGVEVSQAFFPDADKVDSVVVAGSTAQHRWEG AQEAIKRGVPLLVDDSSNTEAINAEIERLGVKDVVRIGDPAADAQQVAANAAAKKQHTEDVMARQITELSAEHGHLDGGA AVLVSKATSAASVATAKASGATVEYLSSGDPRESATLQKDAHAKVVGLGPSFSNQERFHRAVDMLQGPEVPGGGHLIFPE HRLVALYGHPSGGALGVMGEQPAPEAVAKVKELTEHYAAIDPQTTTVPAFEIIATVASADPGPDGNYSNEVTIDELRPWV DEIGKAGGYAVLDLQPGSANFLDQAKQFEELLKLPHVGLALDPEWRINPGEKPMERVGSVEAAEINSTAEWLAGLVRDNN LPQKPFVVHQFQWQMIRDREQLNTTAPELAWILHADGHGPARDKFATWEMVQQDLQPEFTMAWKNFIDEDTPMFTPEQTM DIYPRPGFVSYQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52755; Mature: 52755
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLLKPALVLAIVAGMTLSACGSDSATKDISVAGSELSLDKTALVADSSGVEVSQAFFPD CCCHHHHHHHHHHHCCHHHHCCCCCCCCCEEECCCCCCCCCEEEEECCCCCEEHHHHCCC ADKVDSVVVAGSTAQHRWEGAQEAIKRGVPLLVDDSSNTEAINAEIERLGVKDVVRIGDP CHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCHHHHHHCCCC AADAQQVAANAAAKKQHTEDVMARQITELSAEHGHLDGGAAVLVSKATSAASVATAKASG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHECCCCC ATVEYLSSGDPRESATLQKDAHAKVVGLGPSFSNQERFHRAVDMLQGPEVPGGGHLIFPE CEEEECCCCCCCCCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCC HRLVALYGHPSGGALGVMGEQPAPEAVAKVKELTEHYAAIDPQTTTVPAFEIIATVASAD CEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC PGPDGNYSNEVTIDELRPWVDEIGKAGGYAVLDLQPGSANFLDQAKQFEELLKLPHVGLA CCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEE LDPEWRINPGEKPMERVGSVEAAEINSTAEWLAGLVRDNNLPQKPFVVHQFQWQMIRDRE ECCCCCCCCCCCHHHHHCCCCHHHCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHH QLNTTAPELAWILHADGHGPARDKFATWEMVQQDLQPEFTMAWKNFIDEDTPMFTPEQTM HHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC DIYPRPGFVSYQ CCCCCCCCCCCC >Mature Secondary Structure MRLLKPALVLAIVAGMTLSACGSDSATKDISVAGSELSLDKTALVADSSGVEVSQAFFPD CCCHHHHHHHHHHHCCHHHHCCCCCCCCCEEECCCCCCCCCEEEEECCCCCEEHHHHCCC ADKVDSVVVAGSTAQHRWEGAQEAIKRGVPLLVDDSSNTEAINAEIERLGVKDVVRIGDP CHHCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCHHHHHHCCCC AADAQQVAANAAAKKQHTEDVMARQITELSAEHGHLDGGAAVLVSKATSAASVATAKASG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHECCCCC ATVEYLSSGDPRESATLQKDAHAKVVGLGPSFSNQERFHRAVDMLQGPEVPGGGHLIFPE CEEEECCCCCCCCCCHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEECCC HRLVALYGHPSGGALGVMGEQPAPEAVAKVKELTEHYAAIDPQTTTVPAFEIIATVASAD CEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC PGPDGNYSNEVTIDELRPWVDEIGKAGGYAVLDLQPGSANFLDQAKQFEELLKLPHVGLA CCCCCCCCCCEEHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEE LDPEWRINPGEKPMERVGSVEAAEINSTAEWLAGLVRDNNLPQKPFVVHQFQWQMIRDRE ECCCCCCCCCCCHHHHHCCCCHHHCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHH QLNTTAPELAWILHADGHGPARDKFATWEMVQQDLQPEFTMAWKNFIDEDTPMFTPEQTM HHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC DIYPRPGFVSYQ CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA