| Definition | Chlorobium tepidum TLS, complete genome. |
|---|---|
| Accession | NC_002932 |
| Length | 2,154,946 |
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The map label for this gene is 21675015
Identifier: 21675015
GI number: 21675015
Start: 2076463
End: 2077959
Strand: Reverse
Name: 21675015
Synonym: CT2206
Alternate gene names: NA
Gene position: 2077959-2076463 (Counterclockwise)
Preceding gene: 21675016
Following gene: 21675014
Centisome position: 96.43
GC content: 60.72
Gene sequence:
>1497_bases GTGAAACGGGACGTGACCATCGCCAGGGAGGGAAGTATCGCGATGGCAGGATTTGCGTTCGGCCAGCTCTTCCGCTTTGG CTACAACTTCGCGGCGGCAAGGTTACTTGGCGCGGAGGCTCTCGGCACCTACGCGCTCGTGGTCGCCGTGATGCAGGTGG GCGAAGTGGTGGCTGTAGGTGGATTTGATGCGGGCTTGCTGCGCTTTGTCAGCCAGCGGGAGGGCGAAAAGCGCAAGAGC ATCATCGCGTCGGCTATGAAGCGTTCGGTGCTTGCGTCGATGCTTGCCGGTGTGCTGGTGCTGCTCTTTTCGGGGGATGT TGCCGGGCTGTTGCACGGAGGCTGGCTTATGCAGCTGGCGCTGTGCAGCGCGGCGCTGGCCTTGCCGTTGTCAGTGATGA CGATCATGGCAGGGGTTACCATGCAGGCGCATCACAACCTTTTACCCAAGGTGCTGGCCACGCAGGTGATTCAACCGGTG CTGCTGGTGCTCACGATGGTTGCCGCCCGTTACGCTTTGGGCGTCAGCGCGGCGCTGGCCTTGCCGTTTCTACTTGCGCC GCTGGCGGCACTCGTCTGGATTCTGCCGGGTTTCAGGCAAGTGACTGGTATCGGCCTGAGCGACGTGTGCCGCGCCTACG GCAACCGGGAGCTGTGGCAGTTCTCCCTGCCGCTGCTTGCCGTGGCACTTTTCTCGATCCTGTCGCACTGGATCGACGTG GTGATGCTCGGTTTTCTGACCGATGTGCGTACGGTTGGCCTCTACCAGTCCGCCGCACGCACGGCCGGGCTATTGCGTTC TGTACTGCTTGCATTTTCCGGGATCGCTGCCCCCATAATCGCCGGATACCATGGGCGGCAGGAAAATACAGGCATTCGGG AGACCTACGAGACAGTAAACCGCTGGATTGTGATGCTCGTCATGGTGCCGTTCCTGCTGCTCGTGCTTTTTCCTGACGAG GTGCTCTCCGTGTTTGGCAAGGGCTTCGGTGCGGGATCGACAGCGCTGGTGCTTCTGGCTGTCACGTCGCTTCTGTATGC CTCGTTTGGTCTCGGCAACACGGTGCTTGCCATGAGCGGCGGGGAGCGGCTGAGCATGATGAATCAGGCCGGGGCGCTGC TGCTTCAGACTCTTCTGCACTGGCTCCTGATCCCTCGATTTGGATTGAACGGGGCGGCCTTCTCGACGCTCGCCGTCATG GCGTTGCTGACCATCGTGCGGATGGCTGAATTGCGCTCTCAGCTGGGCATTCCGGCACTTTCGGGCAAACTCTGGAAGCC GCTCGCGGCGGGTATCGCCGTAGGGGCAATCATGCTTGCAATCAGGTACGGGGCCTCGTCGCTACCGCCGCTCATGCTGC TTGCCGTGGCAGGTGTAGCGGGAGGTTTCGTGTATATACTGCTGATCCGGGCGCTCCGGTTGGAACGGGAGGAGATGGAA GTTATTTTAAATTTTATGCCTTTTCTGAAACGTCAAAGAACGAACGCCGCGCCGTGA
Upstream 100 bases:
>100_bases GAAAAGCGGCGCGGCAGGCATTCGCCAGAGCGCACAGCTGGGAGGCGCTTGCCGAAACGATGGTGCACGAGTTGCGTAAT GCCATGCAACGGAGGCTCTC
Downstream 100 bases:
>100_bases AAAAAGCCCCTTGGCCGTCCCTGGTCGCCATAGCCCTGTTAGCCCTTCTGCTCGTTGTGCCTTTCGGCCCGCTTCTCACC CTGCGCTTCGTGCCGGGTTC
Product: polysaccharide efflux transporter, putative
Products: NA
Alternate protein names: Polysaccharide Efflux Transporter; Polysaccharide Biosynthesis Related Protein
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MKRDVTIAREGSIAMAGFAFGQLFRFGYNFAAARLLGAEALGTYALVVAVMQVGEVVAVGGFDAGLLRFVSQREGEKRKS IIASAMKRSVLASMLAGVLVLLFSGDVAGLLHGGWLMQLALCSAALALPLSVMTIMAGVTMQAHHNLLPKVLATQVIQPV LLVLTMVAARYALGVSAALALPFLLAPLAALVWILPGFRQVTGIGLSDVCRAYGNRELWQFSLPLLAVALFSILSHWIDV VMLGFLTDVRTVGLYQSAARTAGLLRSVLLAFSGIAAPIIAGYHGRQENTGIRETYETVNRWIVMLVMVPFLLLVLFPDE VLSVFGKGFGAGSTALVLLAVTSLLYASFGLGNTVLAMSGGERLSMMNQAGALLLQTLLHWLLIPRFGLNGAAFSTLAVM ALLTIVRMAELRSQLGIPALSGKLWKPLAAGIAVGAIMLAIRYGASSLPPLMLLAVAGVAGGFVYILLIRALRLEREEME VILNFMPFLKRQRTNAAP
Sequences:
>Translated_498_residues MKRDVTIAREGSIAMAGFAFGQLFRFGYNFAAARLLGAEALGTYALVVAVMQVGEVVAVGGFDAGLLRFVSQREGEKRKS IIASAMKRSVLASMLAGVLVLLFSGDVAGLLHGGWLMQLALCSAALALPLSVMTIMAGVTMQAHHNLLPKVLATQVIQPV LLVLTMVAARYALGVSAALALPFLLAPLAALVWILPGFRQVTGIGLSDVCRAYGNRELWQFSLPLLAVALFSILSHWIDV VMLGFLTDVRTVGLYQSAARTAGLLRSVLLAFSGIAAPIIAGYHGRQENTGIRETYETVNRWIVMLVMVPFLLLVLFPDE VLSVFGKGFGAGSTALVLLAVTSLLYASFGLGNTVLAMSGGERLSMMNQAGALLLQTLLHWLLIPRFGLNGAAFSTLAVM ALLTIVRMAELRSQLGIPALSGKLWKPLAAGIAVGAIMLAIRYGASSLPPLMLLAVAGVAGGFVYILLIRALRLEREEME VILNFMPFLKRQRTNAAP >Mature_498_residues MKRDVTIAREGSIAMAGFAFGQLFRFGYNFAAARLLGAEALGTYALVVAVMQVGEVVAVGGFDAGLLRFVSQREGEKRKS IIASAMKRSVLASMLAGVLVLLFSGDVAGLLHGGWLMQLALCSAALALPLSVMTIMAGVTMQAHHNLLPKVLATQVIQPV LLVLTMVAARYALGVSAALALPFLLAPLAALVWILPGFRQVTGIGLSDVCRAYGNRELWQFSLPLLAVALFSILSHWIDV VMLGFLTDVRTVGLYQSAARTAGLLRSVLLAFSGIAAPIIAGYHGRQENTGIRETYETVNRWIVMLVMVPFLLLVLFPDE VLSVFGKGFGAGSTALVLLAVTSLLYASFGLGNTVLAMSGGERLSMMNQAGALLLQTLLHWLLIPRFGLNGAAFSTLAVM ALLTIVRMAELRSQLGIPALSGKLWKPLAAGIAVGAIMLAIRYGASSLPPLMLLAVAGVAGGFVYILLIRALRLEREEME VILNFMPFLKRQRTNAAP
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53064; Mature: 53064
Theoretical pI: Translated: 10.56; Mature: 10.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRDVTIAREGSIAMAGFAFGQLFRFGYNFAAARLLGAEALGTYALVVAVMQVGEVVAVG CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC GFDAGLLRFVSQREGEKRKSIIASAMKRSVLASMLAGVLVLLFSGDVAGLLHGGWLMQLA CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LCSAALALPLSVMTIMAGVTMQAHHNLLPKVLATQVIQPVLLVLTMVAARYALGVSAALA HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPFLLAPLAALVWILPGFRQVTGIGLSDVCRAYGNRELWQFSLPLLAVALFSILSHWIDV HHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH VMLGFLTDVRTVGLYQSAARTAGLLRSVLLAFSGIAAPIIAGYHGRQENTGIRETYETVN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH RWIVMLVMVPFLLLVLFPDEVLSVFGKGFGAGSTALVLLAVTSLLYASFGLGNTVLAMSG HHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC GERLSMMNQAGALLLQTLLHWLLIPRFGLNGAAFSTLAVMALLTIVRMAELRSQLGIPAL CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SGKLWKPLAAGIAVGAIMLAIRYGASSLPPLMLLAVAGVAGGFVYILLIRALRLEREEME CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VILNFMPFLKRQRTNAAP HHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKRDVTIAREGSIAMAGFAFGQLFRFGYNFAAARLLGAEALGTYALVVAVMQVGEVVAVG CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC GFDAGLLRFVSQREGEKRKSIIASAMKRSVLASMLAGVLVLLFSGDVAGLLHGGWLMQLA CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LCSAALALPLSVMTIMAGVTMQAHHNLLPKVLATQVIQPVLLVLTMVAARYALGVSAALA HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPFLLAPLAALVWILPGFRQVTGIGLSDVCRAYGNRELWQFSLPLLAVALFSILSHWIDV HHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH VMLGFLTDVRTVGLYQSAARTAGLLRSVLLAFSGIAAPIIAGYHGRQENTGIRETYETVN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH RWIVMLVMVPFLLLVLFPDEVLSVFGKGFGAGSTALVLLAVTSLLYASFGLGNTVLAMSG HHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECC GERLSMMNQAGALLLQTLLHWLLIPRFGLNGAAFSTLAVMALLTIVRMAELRSQLGIPAL CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC SGKLWKPLAAGIAVGAIMLAIRYGASSLPPLMLLAVAGVAGGFVYILLIRALRLEREEME CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VILNFMPFLKRQRTNAAP HHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA